View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_73 (Length: 253)
Name: NF18007_low_73
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 1541291 - 1541510
Alignment:
| Q |
14 |
aagcaaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaatttgattttaaccaccagaagacttgaatttttaactttttcaatag |
113 |
Q |
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| T |
1541291 |
aagcaaaggtgtcgactttcaagtagggtagtcaaaatcaaaacaaattgtaatttgattttaaccattagaagatttgaatttttaactttttcaatag |
1541390 |
T |
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| Q |
114 |
ggaaaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgg |
213 |
Q |
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| T |
1541391 |
ggaaaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgccgaaattcagagaatattaaaagttgtgcgg |
1541490 |
T |
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| Q |
214 |
gaatttttagagaatcctct |
233 |
Q |
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|||||||||||||||||||| |
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| T |
1541491 |
gaatttttagagaatcctct |
1541510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 35120893 - 35120679
Alignment:
| Q |
18 |
aaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaa-tttgattttaaccaccagaagacttgaatttttaactttttcaataggga |
116 |
Q |
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|||| |||||||||| || ||||||| ||||||||||| |||| ||||| |||||||||||||||||||| |||| | ||||| | ||| |||| | |
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| T |
35120893 |
aaagatgtcgacctccaagtagggtaatcaaaatcaaa-caaaatgtaagtttgattttaaccaccagaaagcttggaattttaccatttctaataaagc |
35120795 |
T |
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| Q |
117 |
aaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgggaa |
216 |
Q |
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| T |
35120794 |
taaaagagaagaagtcatgttgttaaaaatcctcttattgtgttccttcaaaataatgaagagtaccgaaatcgaaacaatattaaaagttgtgtgggat |
35120695 |
T |
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| Q |
217 |
tttttagagaatcctc |
232 |
Q |
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| T |
35120694 |
tttttagagaatcctc |
35120679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 42457698 - 42457622
Alignment:
| Q |
153 |
attgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgggaatttttagagaatc |
229 |
Q |
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| T |
42457698 |
attgtgatccttctaaataatgaagagtacgaaagcccaaacaatattaaaagttgtatggaattttttagagaatc |
42457622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 36098057 - 36097966
Alignment:
| Q |
14 |
aagcaaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaatttgattttaaccaccagaagacttgaatttttaactttt |
106 |
Q |
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| T |
36098057 |
aagcaaatgtgtcgacctccaagtagggtaatcaaaatcaaa-caatatgtagtttgattttaaccaccagaaagcttgaatttttacctttt |
36097966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 23453788 - 23454001
Alignment:
| Q |
16 |
gcaaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaatttgattttaaccaccagaagacttgaatttttaactttttcaataggg |
115 |
Q |
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||||||||| ||||||| || | | |||||||||||||| |||| |||| || ||||||||||| ||||| |||| ||||||| |||| |||| | |
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| T |
23453788 |
gcaaaggtgacgacctccaagtcagatagtcaaaatcaaa-caaagtgtagttagattttaaccatcagaatgcttggatttttagattttctaataaag |
23453886 |
T |
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| Q |
116 |
aaaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcggga |
215 |
Q |
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||||| | |||||||| ||||||||||| || | ||||| |||||| ||||||| ||||| | ||||||||||||||||||||| ||| | || |
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| T |
23453887 |
ctaaaagggaagatgtcctcttgttaaaaatccttcctttgtgatccttccaaataatcaataggaccgaaatccaaacaatattaaaagatgtatgaga |
23453986 |
T |
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| Q |
216 |
atttttagagaatcc |
230 |
Q |
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|||||||||||||| |
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| T |
23453987 |
ttttttagagaatcc |
23454001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 6831620 - 6831667
Alignment:
| Q |
185 |
aaatccaaacaatattaaaagttgtgcgggaatttttagagaatcctc |
232 |
Q |
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| T |
6831620 |
aaatccaaacaatattaaaagttgtacgagaatttttagagaatcctc |
6831667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 10399031 - 10398933
Alignment:
| Q |
132 |
cctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgggaatttttagagaatcc |
230 |
Q |
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||||||||||||||| ||| ||||| | |||||| |||||||||| | | |||||||||||||||||| || | | |||||||||||||||||||| |
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| T |
10399031 |
cctgttgttaaaaatcctcacattgcgatccttctaaataatgaagaaaaccgaaatccaaacaatattaagagctatacgggaatttttagagaatcc |
10398933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 50617960 - 50618048
Alignment:
| Q |
118 |
aaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttca-aaataatgaatagtgcacaaatccaaacaatattaaaag |
205 |
Q |
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||||||| |||||||||||||||||||| || ||||| | || ||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
50617960 |
aaaagaggagatgtcctgttgttaaaaatcatcccattgcgctcattcttaaataatgaataggactgaaatccaaacaatattaaaag |
50618048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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