View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_74 (Length: 252)

Name: NF18007_low_74
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_74
NF18007_low_74
[»] chr6 (25 HSPs)
chr6 (13-84)||(27585459-27585530)
chr6 (173-252)||(15508030-15508109)
chr6 (173-252)||(15990048-15990127)
chr6 (173-252)||(30341366-30341445)
chr6 (85-143)||(4231672-4231730)
chr6 (173-245)||(4231570-4231642)
chr6 (85-143)||(15989960-15990018)
chr6 (85-143)||(30341278-30341336)
chr6 (85-143)||(15507942-15508000)
chr6 (202-247)||(31953065-31953110)
chr6 (199-251)||(32869694-32869746)
chr6 (199-251)||(22880690-22880742)
chr6 (200-252)||(28536519-28536571)
chr6 (199-251)||(31109432-31109484)
chr6 (89-143)||(17598678-17598732)
chr6 (184-241)||(3213510-3213566)
chr6 (184-241)||(21293611-21293667)
chr6 (199-251)||(6209497-6209549)
chr6 (199-251)||(17598570-17598622)
chr6 (199-246)||(11427639-11427686)
chr6 (177-247)||(31110771-31110839)
chr6 (85-136)||(31976379-31976430)
chr6 (177-247)||(31976268-31976338)
chr6 (198-246)||(12732503-12732551)
chr6 (84-136)||(31110678-31110730)
[»] chr7 (42 HSPs)
chr7 (173-252)||(22343376-22343455)
chr7 (173-252)||(41915756-41915835)
chr7 (85-143)||(38044321-38044379)
chr7 (173-252)||(38044212-38044291)
chr7 (85-143)||(8238337-8238395)
chr7 (85-143)||(22343485-22343543)
chr7 (173-246)||(32564432-32564505)
chr7 (87-143)||(41915865-41915921)
chr7 (82-143)||(7728030-7728091)
chr7 (199-251)||(7389405-7389457)
chr7 (173-252)||(7727921-7728000)
chr7 (199-251)||(8080415-8080467)
chr7 (173-252)||(8238227-8238307)
chr7 (85-143)||(32564344-32564402)
chr7 (177-247)||(46374812-46374882)
chr7 (85-130)||(40846031-40846076)
chr7 (199-251)||(35137549-35137601)
chr7 (199-251)||(36361945-36361997)
chr7 (199-251)||(40957723-40957775)
chr7 (198-246)||(46033832-46033880)
chr7 (173-252)||(40846119-40846198)
chr7 (201-251)||(10343597-10343647)
chr7 (177-247)||(19329862-19329932)
chr7 (177-247)||(26296664-26296734)
chr7 (184-246)||(32045858-32045920)
chr7 (177-247)||(35522896-35522966)
chr7 (199-247)||(3434582-3434630)
chr7 (199-251)||(3784011-3784063)
chr7 (199-251)||(36362042-36362094)
chr7 (199-251)||(38267056-38267108)
chr7 (85-136)||(21234532-21234583)
chr7 (85-136)||(46033719-46033770)
chr7 (85-136)||(46374742-46374793)
chr7 (89-143)||(4999436-4999490)
chr7 (198-247)||(18207200-18207249)
chr7 (202-251)||(36208189-36208238)
chr7 (199-251)||(38837233-38837285)
chr7 (198-247)||(39255954-39256003)
chr7 (188-241)||(44326292-44326344)
chr7 (199-251)||(3694383-3694435)
chr7 (199-251)||(4999546-4999598)
chr7 (199-247)||(19436219-19436267)
[»] chr3 (40 HSPs)
chr3 (175-252)||(45058561-45058637)
chr3 (85-143)||(42823235-42823293)
chr3 (85-143)||(45058471-45058529)
chr3 (173-245)||(36331335-36331407)
chr3 (198-252)||(13898086-13898140)
chr3 (85-143)||(36331247-36331305)
chr3 (202-247)||(14623874-14623919)
chr3 (199-251)||(11095385-11095437)
chr3 (199-251)||(49607430-49607482)
chr3 (199-251)||(52629316-52629368)
chr3 (199-251)||(53982027-53982079)
chr3 (177-247)||(20764925-20764995)
chr3 (85-139)||(30801651-30801705)
chr3 (177-247)||(41189774-41189844)
chr3 (199-249)||(48587123-48587173)
chr3 (199-251)||(33644216-33644268)
chr3 (199-251)||(54868927-54868979)
chr3 (85-136)||(51419278-51419329)
chr3 (177-251)||(11907387-11907461)
chr3 (177-247)||(26141542-26141612)
chr3 (177-251)||(26754711-26754785)
chr3 (177-251)||(27714901-27714975)
chr3 (177-251)||(31456705-31456779)
chr3 (199-252)||(8076408-8076461)
chr3 (85-142)||(35965700-35965757)
chr3 (175-252)||(42823126-42823203)
chr3 (85-137)||(33118768-33118820)
chr3 (199-251)||(33118883-33118935)
chr3 (85-136)||(20764833-20764884)
chr3 (85-136)||(26141448-26141499)
chr3 (178-241)||(46941157-46941219)
chr3 (199-249)||(36707456-36707506)
chr3 (89-143)||(54868817-54868871)
chr3 (198-247)||(8956782-8956831)
chr3 (198-247)||(24699985-24700034)
chr3 (198-247)||(35536646-35536695)
chr3 (199-251)||(17470421-17470473)
chr3 (85-137)||(35536756-35536808)
chr3 (198-226)||(35965805-35965833)
chr3 (199-247)||(43745766-43745814)
[»] chr8 (43 HSPs)
chr8 (173-252)||(16383392-16383471)
chr8 (85-143)||(32707921-32707979)
chr8 (88-143)||(16056322-16056377)
chr8 (173-252)||(24307799-24307878)
chr8 (173-252)||(30479480-30479559)
chr8 (173-252)||(34307231-34307310)
chr8 (89-143)||(24307715-24307769)
chr8 (85-143)||(32032848-32032906)
chr8 (89-143)||(30479396-30479450)
chr8 (89-143)||(34307340-34307394)
chr8 (173-252)||(16056407-16056486)
chr8 (173-252)||(32032740-32032818)
chr8 (198-247)||(20074965-20075014)
chr8 (199-251)||(504153-504205)
chr8 (199-251)||(1179972-1180024)
chr8 (85-137)||(10284549-10284601)
chr8 (199-251)||(12831063-12831115)
chr8 (199-251)||(14547938-14547990)
chr8 (199-251)||(15197349-15197401)
chr8 (85-137)||(37038609-37038661)
chr8 (177-249)||(40423953-40424025)
chr8 (199-251)||(44507119-44507171)
chr8 (199-246)||(5957851-5957898)
chr8 (87-130)||(16384026-16384069)
chr8 (184-247)||(42221535-42221598)
chr8 (177-247)||(15048192-15048261)
chr8 (186-252)||(24307644-24307710)
chr8 (199-245)||(37038501-37038547)
chr8 (206-251)||(14055631-14055676)
chr8 (199-251)||(10284663-10284715)
chr8 (199-247)||(10621119-10621167)
chr8 (199-251)||(23122629-23122681)
chr8 (199-251)||(34012328-34012380)
chr8 (178-241)||(29705466-29705528)
chr8 (88-143)||(40423864-40423919)
chr8 (85-136)||(43414499-43414550)
chr8 (177-247)||(4854873-4854943)
chr8 (202-252)||(38229444-38229493)
chr8 (199-248)||(8841464-8841513)
chr8 (188-241)||(20148874-20148926)
chr8 (85-137)||(8841350-8841402)
chr8 (185-241)||(26125745-26125800)
chr8 (85-137)||(42354506-42354558)
[»] chr5 (28 HSPs)
chr5 (173-252)||(3921271-3921350)
chr5 (173-252)||(2252174-2252253)
chr5 (85-143)||(2252086-2252144)
chr5 (85-143)||(3921183-3921241)
chr5 (198-246)||(33825355-33825403)
chr5 (85-143)||(39688815-39688873)
chr5 (178-247)||(28177795-28177864)
chr5 (199-251)||(14831830-14831882)
chr5 (199-251)||(18520916-18520968)
chr5 (177-247)||(15409620-15409690)
chr5 (198-247)||(16327921-16327970)
chr5 (199-247)||(2740294-2740342)
chr5 (199-251)||(35785215-35785267)
chr5 (178-245)||(6679720-6679787)
chr5 (173-252)||(39688903-39688982)
chr5 (177-244)||(42414312-42414379)
chr5 (177-247)||(26720536-26720606)
chr5 (177-247)||(26990285-26990355)
chr5 (89-143)||(35785323-35785377)
chr5 (87-137)||(35943812-35943862)
chr5 (201-251)||(36732976-36733026)
chr5 (199-251)||(13811668-13811720)
chr5 (199-251)||(33149670-33149722)
chr5 (199-251)||(35943924-35943976)
chr5 (199-251)||(40145423-40145475)
chr5 (85-136)||(15409528-15409579)
chr5 (208-251)||(36875644-36875687)
chr5 (85-137)||(31009118-31009170)
[»] chr1 (33 HSPs)
chr1 (173-252)||(50591006-50591085)
chr1 (85-143)||(5958918-5958976)
chr1 (85-143)||(47748566-47748624)
chr1 (85-143)||(50590918-50590976)
chr1 (173-252)||(5959006-5959085)
chr1 (173-252)||(41608499-41608578)
chr1 (85-143)||(41608411-41608469)
chr1 (175-249)||(47748461-47748534)
chr1 (85-143)||(44332289-44332347)
chr1 (199-252)||(3000334-3000387)
chr1 (199-251)||(2581931-2581983)
chr1 (199-251)||(9474908-9474960)
chr1 (198-245)||(23597122-23597169)
chr1 (198-245)||(37649220-37649267)
chr1 (177-247)||(32813267-32813337)
chr1 (199-252)||(38595169-38595222)
chr1 (175-227)||(44332379-44332431)
chr1 (85-137)||(51898601-51898653)
chr1 (177-247)||(27564745-27564815)
chr1 (199-245)||(51898715-51898761)
chr1 (173-245)||(37926444-37926516)
chr1 (199-251)||(47452352-47452404)
chr1 (199-251)||(48716314-48716366)
chr1 (184-247)||(3302550-3302613)
chr1 (178-241)||(5489880-5489942)
chr1 (199-250)||(8346420-8346471)
chr1 (85-136)||(32813378-32813429)
chr1 (178-241)||(43571020-43571082)
chr1 (178-241)||(48498896-48498958)
chr1 (188-241)||(2497496-2497548)
chr1 (178-247)||(45044571-45044640)
chr1 (199-247)||(11152410-11152458)
chr1 (199-251)||(38632353-38632405)
[»] chr4 (43 HSPs)
chr4 (173-249)||(17983749-17983825)
chr4 (173-252)||(19670722-19670801)
chr4 (85-143)||(19670634-19670692)
chr4 (85-143)||(29547877-29547935)
chr4 (85-143)||(55475315-55475373)
chr4 (173-252)||(47986223-47986302)
chr4 (173-252)||(32766973-32767052)
chr4 (85-143)||(18924413-18924471)
chr4 (85-143)||(50813810-50813868)
chr4 (199-251)||(11511494-11511546)
chr4 (173-249)||(18924501-18924577)
chr4 (88-143)||(17983664-17983719)
chr4 (173-252)||(29547965-29548044)
chr4 (80-143)||(32767082-32767145)
chr4 (173-252)||(50813898-50813977)
chr4 (173-252)||(55475206-55475285)
chr4 (85-143)||(29589658-29589716)
chr4 (85-143)||(47986332-47986389)
chr4 (175-252)||(8343171-8343248)
chr4 (184-252)||(55079731-55079799)
chr4 (173-252)||(29589746-29589824)
chr4 (201-251)||(3481670-3481720)
chr4 (177-247)||(31910212-31910282)
chr4 (85-143)||(44536664-44536722)
chr4 (202-251)||(6034060-6034109)
chr4 (199-251)||(480479-480531)
chr4 (199-251)||(24995139-24995191)
chr4 (199-251)||(48183081-48183133)
chr4 (199-247)||(50052460-50052508)
chr4 (85-137)||(50526089-50526141)
chr4 (177-244)||(29977908-29977975)
chr4 (198-245)||(50526202-50526249)
chr4 (199-251)||(42044399-42044451)
chr4 (87-143)||(40574903-40574959)
chr4 (199-251)||(41236363-41236415)
chr4 (85-121)||(55079641-55079677)
chr4 (200-247)||(40574799-40574846)
chr4 (89-143)||(6034168-6034222)
chr4 (199-251)||(23608251-23608303)
chr4 (199-251)||(29239902-29239954)
chr4 (85-137)||(29240016-29240068)
chr4 (173-245)||(44536752-44536823)
chr4 (199-251)||(54473565-54473617)
[»] chr2 (42 HSPs)
chr2 (173-249)||(2997493-2997569)
chr2 (173-252)||(43490136-43490215)
chr2 (173-251)||(13365369-13365447)
chr2 (85-143)||(13365477-13365535)
chr2 (85-143)||(43490245-43490303)
chr2 (173-252)||(45097741-45097820)
chr2 (177-247)||(40613912-40613982)
chr2 (88-143)||(2997408-2997463)
chr2 (173-252)||(38732369-38732448)
chr2 (85-143)||(3034901-3034959)
chr2 (177-251)||(3439995-3440069)
chr2 (177-251)||(9058496-9058570)
chr2 (85-143)||(38732478-38732536)
chr2 (199-251)||(5574520-5574572)
chr2 (199-251)||(28863471-28863523)
chr2 (199-251)||(30915479-30915531)
chr2 (177-245)||(42257215-42257283)
chr2 (178-251)||(19930831-19930904)
chr2 (199-251)||(7465767-7465819)
chr2 (199-251)||(17473036-17473088)
chr2 (202-250)||(26891539-26891587)
chr2 (199-251)||(33436132-33436184)
chr2 (187-247)||(33436231-33436291)
chr2 (199-251)||(40701494-40701546)
chr2 (202-244)||(17820039-17820081)
chr2 (85-143)||(45097653-45097711)
chr2 (199-251)||(10249414-10249466)
chr2 (199-251)||(13438359-13438411)
chr2 (199-247)||(17823804-17823852)
chr2 (85-141)||(17823914-17823970)
chr2 (85-137)||(20700945-20700997)
chr2 (199-251)||(27864720-27864772)
chr2 (199-251)||(28381687-28381739)
chr2 (199-251)||(32505680-32505732)
chr2 (85-136)||(40613820-40613871)
chr2 (85-136)||(42257324-42257375)
chr2 (180-246)||(38273155-38273221)
chr2 (89-143)||(40701602-40701656)
chr2 (85-133)||(3440113-3440161)
chr2 (199-251)||(4060701-4060753)
chr2 (199-251)||(38882846-38882897)
chr2 (87-143)||(41758711-41758767)
[»] scaffold0018 (2 HSPs)
scaffold0018 (86-143)||(152622-152679)
scaffold0018 (173-252)||(152513-152592)
[»] scaffold0110 (1 HSPs)
scaffold0110 (85-143)||(8781-8839)
[»] scaffold0321 (1 HSPs)
scaffold0321 (199-251)||(10141-10193)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 27585530 - 27585459
Alignment:
Q  13 gtgaaaaatagctggcaagtttaacaaggatattatgctgtttaattcctaaatatcattacctaatctttc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27585530 gtgaaaaatagctggcaagtttaacaaggatattatgctgtttaattcctaaatatcattacctaatctttc 27585459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 15508030 - 15508109
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  15508030 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 15508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 15990048 - 15990127
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  15990048 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 15990127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 30341366 - 30341445
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  30341366 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 30341445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 4231730 - 4231672
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4231730 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 4231672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 4231642 - 4231570
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  4231642 tgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaa 4231570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 15989960 - 15990018
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  15989960 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattag 15990018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 30341278 - 30341336
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  30341278 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattag 30341336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 15507942 - 15508000
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  15507942 ggaaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattag 15508000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 31953065 - 31953110
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  31953065 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaagg 31953110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 32869746 - 32869694
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  32869746 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 32869694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 22880690 - 22880742
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||| |||| |||||||||||| | ||||||||||||||||||||||    
T  22880690 acgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 22880742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 28536519 - 28536571
Alignment:
Q  200 cgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtt 28536571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31109432 - 31109484
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| |||||| | ||||||||||||||||||||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgt 31109484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 17598732 - 17598678
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  17598732 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattag 17598678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 3213510 - 3213566
Alignment:
Q  184 ggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    |||||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  3213510 ggggtccagattgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 3213566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 21293667 - 21293611
Alignment:
Q  184 ggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    |||||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  21293667 ggggtccagattgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 21293611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 6209497 - 6209549
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||| ||||||||| |||| |||||||  |||||||||||||||||||||||    
T  6209497 acgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgt 6209549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 17598622 - 17598570
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||    |||||||||||||||||||||    
T  17598622 acgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgt 17598570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 11427686 - 11427639
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    ||||||||||||||| |||||||||||| |  ||||||||||||||||    
T  11427686 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaag 11427639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 31110771 - 31110839
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||| |||||||| | || ||||||||||||||  |||| ||||||| | ||||||||||||||||||    
T  31110771 cttgtgcagggtccatgtggttacgtgtcagatttt--tgtgagtgtcaaagggtgtattgccacctaagg 31110839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 31976430 - 31976379
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  31976430 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccat 31976379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 31976338 - 31976268
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||| ||| |   |||||||||||||||| ||||||||| || | || |||||||||||||||    
T  31976338 cttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaagg 31976268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 12732551 - 12732503
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    |||||||||||||||| |||||||||||| || | ||||||||| ||||    
T  12732551 cacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaag 12732503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 31110678 - 31110730
Alignment:
Q  84 cggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    |||||||||||||||||||| | |||| ||  ||||||| |||||||||||||    
T  31110678 cggaaaatgttacatagacatcctttatttccatacacctttgtacaccccat 31110730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 22343455 - 22343376
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  22343455 tgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 22343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 41915835 - 41915756
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  41915835 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtt 41915756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 38044379 - 38044321
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38044379 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 38044321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 38044291 - 38044212
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| |  || |||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  38044291 tgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtt 38044212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 8238395 - 8238337
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8238395 ggaaaatgttacatagacgccttttaattgcatacacccttgtacaccccatgtattag 8238337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 22343543 - 22343485
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  22343543 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattag 22343485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 32564432 - 32564505
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    |||| ||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  32564432 tgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 32564505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 41915921 - 41915865
Alignment:
Q  87 aaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  41915921 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattag 41915865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 7728091 - 7728030
Alignment:
Q  82 ttcggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  7728091 ttcgaaaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattag 7728030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 7389457 - 7389405
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  7389457 acgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgt 7389405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 7728000 - 7727921
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||||||||||||||   ||| |||||||||||||||||  |||||||  ||||||| |||||||||||||||    
T  7728000 tgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtt 7727921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 8080415 - 8080467
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  8080415 acgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgt 8080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 8238307 - 8238227
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccaccta-agggtgtt 252  Q
    ||||||||||||||||||||||    || |||||||||||| |||||||||||| | ||||||||||||||| ||||||||    
T  8238307 tgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtt 8238227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 32564344 - 32564402
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||    
T  32564344 ggaagatgttacatagacatattttaattgcatacacccttgtacacctcatgtattag 32564402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 46374812 - 46374882
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | | |||||||||||||||| ||||||||| || | |||| |||||||||||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaagg 46374882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 40846031 - 40846076
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtaca 130  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  40846031 ggaaaatgttacatagataccttttaattgcatacacccttgtaca 40846076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 35137601 - 35137549
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| |||||||| |||||||||||| | ||||||||||||||||||||||    
T  35137601 acgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 35137549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 36361945 - 36361997
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| |  |||||||||||||||||||||    
T  36361945 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgt 36361997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 40957775 - 40957723
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||    
T  40957775 acgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgt 40957723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 46033832 - 46033880
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    |||||||||||||||||||||||||| || | |||||||||||||||||    
T  46033832 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaag 46033880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 40846119 - 40846198
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||| |||||||||||||||||    || ||| |||||||| ||||| |||||||| |||||||||||||||||| ||||    
T  40846119 tgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtt 40846198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 10343597 - 10343647
Alignment:
Q  201 gtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||| |||||||||||||  ||||||| ||||||||||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgt 10343647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 19329932 - 19329862
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||  |  | ||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  19329932 cttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 19329862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 26296734 - 26296664
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||||| | ||||| |||||||||||||||| ||| || | || ||||| |||||||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaagg 26296664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 32045920 - 32045858
Alignment:
Q  184 ggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    |||||| |||| || |||||||||||||||||||||||||| || | | ||||||||||||||    
T  32045920 ggggtctatatggttacgtgtcagatttttatgtgggtgtccagtaatatattgccacctaag 32045858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 35522966 - 35522896
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||| ||||||| | |||||||||||||||| ||||||||| ||   |||||||||||| |||||    
T  35522966 cttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaagg 35522896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 3434630 - 3434582
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||| ||||| |||||||||||| | ||||||||||||||||||    
T  3434630 acgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaagg 3434582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 3784063 - 3784011
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||    |||||||||||||||||||||    
T  3784063 acgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgt 3784011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 36362094 - 36362042
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| |  |||||| ||||||||||||||    
T  36362094 acgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgt 36362042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 38267108 - 38267056
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | |||||||| ||| |||||||||    
T  38267108 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgt 38267056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 21234583 - 21234532
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    |||||||||||||||||||||||||| |   ||||||| |||||||||||||    
T  21234583 ggaaaatgttacatagacaccttttattctcatacaccattgtacaccccat 21234532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 46033719 - 46033770
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  46033719 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccat 46033770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 46374742 - 46374793
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  46374742 ggaaaatgttacatagacaccatttattcccatacacccttgtacaccccat 46374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 4999436 - 4999490
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||||| |   |||||||||||||||||||||| |||||    
T  4999436 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattag 4999490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 18207249 - 18207200
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||| |||||||| | |||||||||||  ||||||||||||||||||    
T  18207249 cacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaagg 18207200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 36208238 - 36208189
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| ||||| |||||||||||| || |||||| ||||||||||||||    
T  36208238 tgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgt 36208189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 38837285 - 38837233
Alignment:
Q  199 acgtgtcagatttttatgtgggtgt-caaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  38837285 acgtgtcagatttttgtgtaggtgtacaagg-gtgtattgccacctaagggtgt 38837233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 39255954 - 39256003
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | ||||| |||||  ||||||||||||||||||    
T  39255954 cacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaagg 39256003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 44326292 - 44326344
Alignment:
Q  188 tccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    |||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  44326292 tccagattgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 44326344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 3694435 - 3694383
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||| ||   |||||||| |||||||||||||    
T  3694435 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgt 3694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 4999546 - 4999598
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||| |||||||||| ||||||||||||   ||||||||||| ||||||||||    
T  4999546 acgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgt 4999598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 19436219 - 19436267
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| ||||||||||||   |||||||| |||||||||    
T  19436219 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagg 19436267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 45058561 - 45058637
Alignment:
Q  175 tacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45058561 tacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaagg-gtgtattgccacctaagggtgtt 45058637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 42823293 - 42823235
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  42823293 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattag 42823235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 45058471 - 45058529
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  45058471 ggaaaatgttacatagacaccttttaattgcatacaccattgtacaccccatgtattag 45058529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 36331335 - 36331407
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| ||| ||||||||||||    
T  36331335 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 13898086 - 13898140
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13898086 cacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtt 13898140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 36331247 - 36331305
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  36331247 ggaaaatgttacatatacatcttttaattgcatacacccttgtacaccccatgtattag 36331305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 14623874 - 14623919
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  14623874 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaagg 14623919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 11095385 - 11095437
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 11095437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 49607482 - 49607430
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  49607482 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 49607430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 52629368 - 52629316
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  52629368 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 52629316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 53982079 - 53982027
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  53982079 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 53982027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 20764925 - 20764995
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||| |||||||||| | | |||||||||||||||| ||||||||| || ||||||||| ||||||||||    
T  20764925 cttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagg 20764995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 30801651 - 30801705
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgta 139  Q
    |||||||||||||||||||||||||| |   ||||||||||||||||||||||||    
T  30801651 ggaaaatgttacatagacaccttttattctcatacacccttgtacaccccatgta 30801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 41189774 - 41189844
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | | ||||||||| |||||||||||||||||||    |||||||||||||||||    
T  41189774 cttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaagg 41189844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 48587123 - 48587173
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||||||    
T  48587123 acgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggt 48587173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 33644268 - 33644216
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  33644268 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgt 33644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 54868927 - 54868979
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  54868927 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgt 54868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 51419278 - 51419329
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||| |||||||||| ||  |||||||||||||||||||||    
T  51419278 ggaaaatgttacataaacaccttttatttccatacacccttgtacaccccat 51419329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 11907461 - 11907387
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||||||   ||| |||||||||||| |||| ||||  ||| |||||||| |||||||||||||    
T  11907461 cttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgt 11907387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 26141542 - 26141612
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||| ||||||||| |   |||||||||||||||| ||||||||| || | ||||||||||||||||||    
T  26141542 cttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaagg 26141612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 26754785 - 26754711
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||| |   ||| |||||||||||| ||||| |||| | | ||||||||||||||||||||||    
T  26754785 cttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgt 26754711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 27714901 - 27714975
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||    ||||||||||||||| |||||||||||| | ||||||| |||||||| |||||    
T  27714901 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgt 27714975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 31456779 - 31456705
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||    ||||||||||||||| |||||||||||| | |||||||||| |||| ||||||    
T  31456779 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgt 31456705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 8076461 - 8076408
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||| |||||||| |||||||||||| | ||||| |||||||||||||||||    
T  8076461 acgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtt 8076408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 35965700 - 35965757
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtatta 142  Q
    |||||||||||||||||||||||||| |   ||||||||||||||||| |||| ||||    
T  35965700 ggaaaatgttacatagacaccttttattctcatacacccttgtacacctcatgaatta 35965757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 42823203 - 42823126
Alignment:
Q  175 tacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||| ||||||||||||||   ||| ||||| |||||| |||||||||||||| ||||||| |||| ||| ||||||    
T  42823203 tacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgtt 42823126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 33118768 - 33118820
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    |||||||||||| |||||||| |||| ||  ||||||||||||||||||||||    
T  33118768 ggaaaatgttacgtagacaccctttatttccatacacccttgtacaccccatg 33118820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 33118883 - 33118935
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||| |||||| |||||||||||| | |||||||| |||||||||||||    
T  33118883 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgt 33118935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 20764833 - 20764884
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  20764833 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccat 20764884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 26141448 - 26141499
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| ||  |||||| ||||||||||||||    
T  26141448 ggaaaatgttacatagacaccctttatttccatacactcttgtacaccccat 26141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 46941157 - 46941219
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    ||||| ||||||||  ||| ||||||||||| |||||||||||||| || ||||||||||||||    
T  46941157 ttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgt-aaagagtgtattgccac 46941219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 36707456 - 36707506
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    ||||||||||||||| ||||| |||||| | |||||||| |||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggt 36707506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 54868817 - 54868871
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||| ||| |||||    
T  54868817 aatgatacatagacaccttttatttccatacacccttgtacaccctatgcattag 54868871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 8956831 - 8956782
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||| ||||||||||||||||||| |  ||||||||||| |||||    
T  8956831 cacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataagg 8956782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 24699985 - 24700034
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||| ||||||||||||||||||||||   ||||||||||| ||||||    
T  24699985 cacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaagg 24700034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 35536695 - 35536646
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||| |||||||||||||||||||   |||||||||||| |||||    
T  35536695 cacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataagg 35536646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 17470473 - 17470421
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||| ||   |||||||||||||||| |||||    
T  17470473 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgt 17470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 35536808 - 35536756
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||||||||| |||| |   |||||||||| |||||||||||    
T  35536808 ggaaaatgttacatagacaccatttattctcatacacccttctacaccccatg 35536756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 35965805 - 35965833
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaa 226  Q
    |||||||||||||||||||||||||||||    
T  35965805 cacgtgtcagatttttatgtgggtgtcaa 35965833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 43745814 - 43745766
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||| ||||||| |||| |||||| |||||||||||||| |||||    
T  43745814 acgtgtcaaatttttacgtggatgtcaaagagtgtattgccacttaagg 43745766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 16383471 - 16383392
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16383471 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 16383392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 32707921 - 32707979
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32707921 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 32707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 16056322 - 16056377
Alignment:
Q  88 aaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16056322 aaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 16056377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 24307799 - 24307878
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  24307799 tgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtt 24307878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 30479480 - 30479559
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||| ||||||||| | ||| |||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  30479480 tgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtt 30479559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 34307310 - 34307231
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||| |||||   ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  34307310 tgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 34307231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 24307715 - 24307769
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24307715 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 24307769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 32032906 - 32032848
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  32032906 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattag 32032848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 30479396 - 30479450
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  30479396 aatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattag 30479450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 34307394 - 34307340
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34307394 aatgttacatagacaccttttaattgcatacacccttgtacaccccatatattag 34307340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 16056407 - 16056486
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||  ||||||| ||| ||||| ||||    
T  16056407 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtt 16056486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 32032818 - 32032740
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||| || ||||||| | ||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  32032818 tgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaagga-tgtattgccacctaagggtgtt 32032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 20074965 - 20075014
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  20074965 cacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaagg 20075014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 504153 - 504205
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  504153 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgt 504205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 1179972 - 1180024
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||| ||||||||||||||    
T  1179972 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgt 1180024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 10284549 - 10284601
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    |||||||||||||||||||||||||| |  |||||| ||||||||||||||||    
T  10284549 ggaaaatgttacatagacaccttttattcttatacaaccttgtacaccccatg 10284601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 12831115 - 12831063
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | |||||||| |||||||||||||    
T  12831115 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgt 12831063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 14547990 - 14547938
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  14547990 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgt 14547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 15197401 - 15197349
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||| ||||    
T  15197401 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgt 15197349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 37038661 - 37038609
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||||||||||    
T  37038661 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatg 37038609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 40423953 - 40424025
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    ||||||||||||||| ||    ||||||||||||||| ||||| |||||| | ||||||||||||||||||||    
T  40423953 cttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggt 40424025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 44507119 - 44507171
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||| || ||||||||| ||||||||||||||    
T  44507119 acgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgt 44507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 5957898 - 5957851
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||    
T  5957898 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaag 5957851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 16384069 - 16384026
Alignment:
Q  87 aaaatgttacatagacaccttttaattgtatacacccttgtaca 130  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  16384069 aaaatgttacataaacaccttttaattgcatacacccttgtaca 16384026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 42221598 - 42221535
Alignment:
Q  184 ggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||  | ||||||||||||||| |||||||||| |||| ||||||| |||||||||    
T  42221598 ggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaagg 42221535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 15048192 - 15048261
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | |  ||||||||||||||| ||| |||||||| | ||||||||||||||||||    
T  15048192 cttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaagg 15048261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 24307710 - 24307644
Alignment:
Q  186 ggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||| | ||| | |||||||||| |||||||||||| |  ||||||||||||||||||||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtt 24307644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 37038547 - 37038501
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||    
T  37038547 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 37038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 14055631 - 14055676
Alignment:
Q  206 agatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||    
T  14055631 agatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgt 14055676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 10284663 - 10284715
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||| |||||| |||||||||||| |||||||||| ||| |||||||||    
T  10284663 acgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgt 10284715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 10621119 - 10621167
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| |||||||||||| | ||||||| ||||||||||    
T  10621119 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 10621167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 23122629 - 23122681
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   |||||||||||| |||||||||    
T  23122629 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgt 23122681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 34012328 - 34012380
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||| |||||| |||||||||||| | ||||||| ||||||||||||||    
T  34012328 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgt 34012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 29705466 - 29705528
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    ||||||||||||||  ||| ||||||||||| |||| ||||||||| |||| ||||||||||||    
T  29705466 ttgtgcggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagg-gtgtattgccac 29705528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 40423864 - 40423919
Alignment:
Q  88 aaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||| ||||||||||||||||| |   ||||||||||||||||| ||||||||||    
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcatgtattag 40423919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 43414499 - 43414550
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  43414499 ggaaaatgttacatagacaccctttattgccatacacccttgtacaccccat 43414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 4854873 - 4854943
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||| |||||||| | | ||| | |||||||||||||| ||||| || | ||||||||||||||||||    
T  4854873 cttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaagg 4854943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 38229493 - 38229444
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||| |||||    
T  38229493 tgtcagatttttgtgtgggtgtc-aggagcgtattgccacctaagagtgtt 38229444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 8841464 - 8841513
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaaggg 248  Q
    |||||| |||||||| |||||||||||| | ||||| |||||||||||||    
T  8841464 acgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaaggg 8841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 20148874 - 20148926
Alignment:
Q  188 tccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    |||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  20148874 tccagattgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 20148926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 8841350 - 8841402
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||||||||| |||| |   |||||| |||||||||||||||    
T  8841350 ggaaaatgttacatagacaccatttattctcatacactcttgtacaccccatg 8841402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 26125745 - 26125800
Alignment:
Q  185 gggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    ||||||| |||| ||||||||||| ||||||| |||||| |||| ||||||||||||    
T  26125745 gggtccagattgccacgtgtcagaattttatgcgggtgtaaagg-gtgtattgccac 26125800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 42354506 - 42354558
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||||||||| |||| |   |||||||||| |||||||||||    
T  42354506 ggaaaatgttacatagacaccatttattctcatacacccttctacaccccatg 42354558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 3921271 - 3921350
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  3921271 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 3921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 2252174 - 2252253
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  2252174 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtt 2252253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 2252086 - 2252144
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2252086 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattag 2252144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 3921183 - 3921241
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  3921183 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattag 3921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 33825355 - 33825403
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33825355 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 33825403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 39688815 - 39688873
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||    
T  39688815 ggaaaatgttacatagacaccttttaattgcatacacctttgtacaccctatgtattag 39688873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 28177864 - 28177795
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| |   |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  28177864 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 28177795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 14831882 - 14831830
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  14831882 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgt 14831830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 18520916 - 18520968
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  18520916 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 18520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 15409620 - 15409690
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | |  ||||||||||||||| |||||||||||| || ||||||| |||||||||    
T  15409620 cttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaagg 15409690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 16327970 - 16327921
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  16327970 cacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaagg 16327921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 2740342 - 2740294
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  2740342 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 2740294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 35785267 - 35785215
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  35785267 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgt 35785215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 6679787 - 6679720
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    ||||||||||||||| |   |||||||||||||||| ||||||||||||   ||||||||||||||||    
T  6679787 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaa 6679720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 39688903 - 39688982
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||| |||||||| |||||   ||| | |||||||||| ||||||||||||||  ||||||||||| ||||||||||    
T  39688903 tgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtt 39688982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 42414312 - 42414379
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccaccta 244  Q
    ||||||||||||||| ||    ||||||||||||||| |||||||||||| | |||||||||||||||    
T  42414312 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 42414379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 26720606 - 26720536
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||| ||||| | | |||||||||||||||| ||| ||||| || | ||||||||||||||||||    
T  26720606 cttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaagg 26720536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 26990355 - 26990285
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||| ||||| | | |||||||||||||||| ||| ||||| || | ||||||||||||||||||    
T  26990355 cttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaagg 26990285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 35785377 - 35785323
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  35785377 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattag 35785323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 35943812 - 35943862
Alignment:
Q  87 aaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    |||||||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  35943812 aaaatgttacatagacacattttatttccatacacccttgtacaccccatg 35943862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 36732976 - 36733026
Alignment:
Q  201 gtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||| |||||||||||| | ||||||||| ||||||||||||    
T  36732976 gtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgt 36733026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 13811720 - 13811668
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||    |||||||||||||||||||||    
T  13811720 acgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgt 13811668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 33149670 - 33149722
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||| |||||| |||||||||||| | ||||||| ||||||||||||||    
T  33149670 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgt 33149722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 35943924 - 35943976
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||    |||||||||||||||||||||    
T  35943924 acgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgt 35943976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 40145475 - 40145423
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| ||| || | ||||||||||||||||||||||    
T  40145475 acgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgt 40145423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 15409528 - 15409579
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||| ||||| |||| | | |||||||||||||||||||||    
T  15409528 ggaaaatgttacataaacaccctttattcgcatacacccttgtacaccccat 15409579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 36875644 - 36875687
Alignment:
Q  208 atttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| |||||||||||| | ||||||||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 36875687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 31009170 - 31009118
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||||||||| |||| |   ||||||| ||||||||||||||    
T  31009170 ggaaaatgttacatagacaccctttattctcatacacctttgtacaccccatg 31009118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 50591006 - 50591085
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  50591006 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtt 50591085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 5958918 - 5958976
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  5958918 ggaaaatgttacatagacacattttaattgcatacacccttgtacaccccatgtattag 5958976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 47748624 - 47748566
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  47748624 ggaaaatgttacatagacaccttttaattgcatacactcttgtacaccccatgtattag 47748566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 50590918 - 50590976
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  50590918 ggaaaatgttacatagataccttttaattgcatacacccttgtacaccccatgtattag 50590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 5959006 - 5959085
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||||||||||||||   ||| |||||||||||| |||||||||||||  |||||||||||| ||||||||||    
T  5959006 tgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtt 5959085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 41608499 - 41608578
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||| |||||||||||| | ||| |||||||||||| |||| ||||||||| |||||||||||||||||| ||||    
T  41608499 tgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtt 41608578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 41608411 - 41608469
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  41608411 ggaaaatgttacataaacaccttttaattgcatacacccttgtacaccctatgtattag 41608469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 47748534 - 47748461
Alignment:
Q  175 tacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    |||||||||||| ||||||| | ||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  47748534 tacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaagg-gtgtattgccacctaagggt 47748461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 44332289 - 44332347
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||    
T  44332289 ggaaaatgttacatagataccttttaattgcatacacccttgtacactctatgtattag 44332347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 3000387 - 3000334
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  3000387 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtt 3000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 2581983 - 2581931
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  2581983 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 2581931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 9474908 - 9474960
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  9474908 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 9474960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 23597122 - 23597169
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  23597122 cacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaa 23597169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 37649267 - 37649220
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  37649267 cacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaa 37649220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 32813337 - 32813267
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| |   |||||||||||||||| ||||||||| || | ||||||||||||||||||    
T  32813337 cttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaagg 32813267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 38595222 - 38595169
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||| ||||||    
T  38595222 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtt 38595169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 44332379 - 44332431
Alignment:
Q  175 tacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaag 227  Q
    |||||||||||||||||||  | ||| ||||||||||||||||||||||||||    
T  44332379 tacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaag 44332431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 51898601 - 51898653
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||||||||||    
T  51898601 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatg 51898653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 27564745 - 27564815
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||  |  | ||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  27564745 cttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagg 27564815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 51898715 - 51898761
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||    
T  51898715 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 51898761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 37926444 - 37926516
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    ||||||||| |||| ||||| | | |||||||||||||||||||||||||| ||    |||||||||||||||    
T  37926444 tgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaa 37926516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 47452352 - 47452404
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| |||||||| |||||||||||| | ||||||| ||||||||||||||    
T  47452352 acgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgt 47452404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 48716314 - 48716366
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| ||||||   ||||||||||||||||||||||    
T  48716314 acgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgt 48716366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 3302550 - 3302613
Alignment:
Q  184 ggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||  | ||||||||||||||| |||||||||| |||| | ||||| |||||||||    
T  3302550 ggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaagg 3302613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 5489880 - 5489942
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    ||||| ||||||||  ||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  5489880 ttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 5489942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 8346420 - 8346471
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtg 250  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||| ||||    
T  8346420 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtg 8346471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 32813429 - 32813378
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  32813429 ggaaaatgttacatagacaccatttattcccatacacccttgtacaccccat 32813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 43571082 - 43571020
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    ||||| ||||||||  ||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  43571082 ttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 43571020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 48498958 - 48498896
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    ||||| ||||||||  ||| ||||||||||| |||||||||||||| |||| ||||||||||||    
T  48498958 ttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagg-gtgtattgccac 48498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 2497548 - 2497496
Alignment:
Q  188 tccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccac 241  Q
    |||| |||||||||||||||| |||||||||||| | |||| ||||||||||||    
T  2497548 tccagattgtcacgtgtcagaattttatgtgggtataaagg-gtgtattgccac 2497496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 45044571 - 45044640
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| | |  || |||||||||||| | ||||||||||   ||||||||||||||||||    
T  45044571 ttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaagg 45044640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 11152410 - 11152458
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| ||||| |||| | | ||||||||||||||||||    
T  11152410 acgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaagg 11152458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 38632353 - 38632405
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| ||| ||   ||||||||||||||||||||||    
T  38632353 acgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgt 38632405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 17983749 - 17983825
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17983749 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 19670722 - 19670801
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  19670722 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtt 19670801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 19670634 - 19670692
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19670634 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 19670692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 29547877 - 29547935
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29547877 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 29547935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 55475373 - 55475315
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55475373 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 55475315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 47986302 - 47986223
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||||  ||||||||||||||||||||||    
T  47986302 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtt 47986223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 32767052 - 32766973
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||| |||||||||| | ||| |||||||||||| | |||||||||||| ||||||||||||||||| |||||    
T  32767052 tgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtt 32766973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 18924413 - 18924471
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  18924413 ggaaaatgttacatagacaccttttaattgcatacacccttttacacctcatgtattag 18924471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 50813810 - 50813868
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  50813810 ggaaaatgttacatagacaccttttaattgcatacacccttgtacatctcatgtattag 50813868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 11511494 - 11511546
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  11511494 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgt 11511546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 18924501 - 18924577
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    ||||||||||||| || ||||||| ||| |||||||||||| ||||| | |||||| ||||||||||||||||||||    
T  18924501 tgtacttgtgcggagttcatattgccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggt 18924577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 17983664 - 17983719
Alignment:
Q  88 aaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  17983664 aaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattag 17983719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 29547965 - 29548044
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||| |||||| ||||||| | ||| |||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  29547965 tgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtt 29548044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 32767145 - 32767082
Alignment:
Q  80 ctttcggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||    
T  32767145 ctttaggaaaatgttacatagacacattttaattgcatacacccttgtacactctatgtattag 32767082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 50813898 - 50813977
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||| |||||   ||| |||||||||||| |||||||||||||| ||||||| ||||||||| |||||    
T  50813898 tgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtt 50813977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 55475285 - 55475206
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||| ||| |||||||||| | ||| |||||||||||| |||||||||||| | |||||||||||||||||| ||||    
T  55475285 tgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtt 55475206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 29589658 - 29589716
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||| ||||||||||    
T  29589658 ggaaaatattacatagacaccttttaattgcatacactcttgtacacctcatgtattag 29589716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 47986389 - 47986332
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  47986389 ggaaaatgttacatagacaccttt-aattgcatacacccttgtacatcccatgtattag 47986332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 8343171 - 8343248
Alignment:
Q  175 tacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||| |||||||||||||| | ||| |||||||||||||||| |||||||| |  ||||||||||||||||| ||||    
T  8343171 tacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtt 8343248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 55079731 - 55079799
Alignment:
Q  184 ggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||| | ||| |||||||||||| | |||||||||||  |||||||||||||||||||||||    
T  55079731 ggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtt 55079799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 29589746 - 29589824
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||| ||||||||||| | ||| | |||||||||| |||||||||||||| |||||||| || |||||||||||    
T  29589746 tgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgtt 29589824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 3481720 - 3481670
Alignment:
Q  201 gtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  3481720 gtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgt 3481670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 31910282 - 31910212
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | |  | ||||||||||||| |||||||||||| |||||||||| |||||||||    
T  31910282 cttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaagg 31910212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 44536664 - 44536722
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||| ||||||||| |||||  ||||||||||| |||||||||    
T  44536664 ggaaaatgttacatagacacattttaattgcatacattcttgtacaccctatgtattag 44536722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 6034109 - 6034060
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  6034109 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 6034060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 480479 - 480531
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | |||||||| |||||||||||||    
T  480479 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgt 480531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 24995139 - 24995191
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||| ||||||||||||||||||| | ||||||||||| ||||||||||    
T  24995139 acgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgt 24995191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 48183081 - 48183133
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | |||||||||||| |||||||||    
T  48183081 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgt 48183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 50052460 - 50052508
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  50052460 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 50052508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 50526089 - 50526141
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||||||||||    
T  50526089 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatg 50526141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 29977975 - 29977908
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccaccta 244  Q
    |||||| |||||||||||    ||||||||||||||| ||||||||| |||| |||||||||||||||    
T  29977975 cttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 50526202 - 50526249
Alignment:
Q  198 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||    
T  50526202 cacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 50526249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 42044399 - 42044451
Alignment:
Q  199 acgtgtcagatttttatgtgggtgt-caaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  42044399 acgtgtcagatttttgtgtgggtgtacaagga-tgtattgccacctaagggtgt 42044451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 40574959 - 40574903
Alignment:
Q  87 aaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||| |||||||||||||| |   ||||||||||||||||||||| ||||||    
T  40574959 aaaatgttagatagacaccttttattctcatacacccttgtacaccccatatattag 40574903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 41236415 - 41236363
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| ||||||   ||||||||||||||||||||||    
T  41236415 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgt 41236363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 55079641 - 55079677
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacac 121  Q
    |||||||||||||||||||||||||||||| ||||||    
T  55079641 ggaaaatgttacatagacaccttttaattgcatacac 55079677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 40574846 - 40574799
Alignment:
Q  200 cgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||| |||||||||||| | ||||||| ||||||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 40574799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 6034222 - 6034168
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||||| |   |||||||||||||||||||||| |||||    
T  6034222 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattag 6034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 23608303 - 23608251
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   |||||||| || ||||||||||    
T  23608303 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgt 23608251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 29239954 - 29239902
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| |||||||| ||||| ||||||   ||||||||||||||||||||||    
T  29239954 acgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgt 29239902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 29240068 - 29240016
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||||||||| |||| |   |||||| |||||||||||||||    
T  29240068 ggaaaatgttacatagacaccctttattcccatacactcttgtacaccccatg 29240016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 44536752 - 44536823
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    ||||||| || |||||| ||||   ||| |||||||||||| ||||| |||||||| ||||||||||||||||    
T  44536752 tgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtcaagg-gtgtattgccacctaa 44536823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 54473565 - 54473617
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| |||||||| ||||||||||||   |||||||| |||||||||||||    
T  54473565 acgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgt 54473617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 2997493 - 2997569
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggt 249  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  2997493 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 43490215 - 43490136
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  43490215 tgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtt 43490136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 13365447 - 13365369
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| || |||||||| ||||||||||    
T  13365447 tgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgt 13365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 13365535 - 13365477
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  13365535 ggaaaatgttacatagacaccttttaattgcattcacccttgtacaccccatgtattag 13365477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 43490303 - 43490245
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  43490303 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccctatgtattag 43490245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 45097741 - 45097820
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||||||||||||||||||||| | ||| |||||||||||| | ||||||||||||  ||||||||||||||||| ||||    
T  45097741 tgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtt 45097820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 40613912 - 40613982
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    |||||||||||||||| | | |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  40613912 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 40613982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 2997408 - 2997463
Alignment:
Q  88 aaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  2997408 aaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattag 2997463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 38732448 - 38732369
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    ||||||||||||||||||||||   ||| |||||||||||| ||||||||||||||  ||||||| ||| ||||||||||    
T  38732448 tgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtt 38732369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 3034901 - 3034959
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||||    
T  3034901 ggaaaatgttacatagacaccttttaattgcatacaccttggtacacctcatgtattag 3034959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 3440069 - 3439995
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||  |  |||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||    
T  3440069 cttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagggtgt 3439995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 9058570 - 9058496
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  9058570 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 9058496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 38732536 - 38732478
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||    
T  38732536 ggaaaatgttacatagacaccttttaattgcatacatccttgtacatctcatgtattag 38732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 5574520 - 5574572
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  5574520 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgt 5574572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 28863523 - 28863471
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  28863523 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 28863471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 30915531 - 30915479
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  30915531 acgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgt 30915479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 42257283 - 42257215
Alignment:
Q  177 cttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaa 245  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||    |||||||||||||||    
T  42257283 cttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaa 42257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 19930831 - 19930904
Alignment:
Q  178 ttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||||||||||| ||    ||||||||||||||| ||||| |||||| | ||||||||||||||||||||||    
T  19930831 ttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgt 19930904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 7465767 - 7465819
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  7465767 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgt 7465819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 17473088 - 17473036
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  17473088 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgt 17473036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 26891539 - 26891587
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtg 250  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  26891539 tgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtg 26891587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 33436132 - 33436184
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    |||||| |||||||| |||||||||||| | ||||||||||||||||||||||    
T  33436132 acgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgt 33436184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 33436291 - 33436231
Alignment:
Q  187 gtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||| || |||||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  33436291 gtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaagg 33436231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 40701546 - 40701494
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  40701546 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgt 40701494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 17820039 - 17820081
Alignment:
Q  202 tgtcagatttttatgtgggtgtcaaggagtgtattgccaccta 244  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 17820081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 45097653 - 45097711
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||| ||| |||||||||| |||||| |||||||| || |||||||||    
T  45097653 ggaaaatgttacataaacatcttttaattgcatacactcttgtacatccgatgtattag 45097711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 10249414 - 10249466
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   |||||||| |||||||||||||    
T  10249414 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgt 10249466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 13438411 - 13438359
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||||| |  ||||||| |||||||||||||    
T  13438411 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgt 13438359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 17823852 - 17823804
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagg 247  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaagg 17823804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 17823970 - 17823914
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtatt 141  Q
    ||||||||||||||||||| | |||| ||  ||||||||||||||||||||| ||||    
T  17823970 ggaaaatgttacatagacatcctttatttacatacacccttgtacaccccatatatt 17823914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 20700997 - 20700945
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatg 137  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||||||||    
T  20700997 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatg 20700945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 27864772 - 27864720
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| |||||| | |||||||||||| |||||||||    
T  27864772 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgt 27864720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 28381687 - 28381739
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| |||||||||| |   ||||||||||||||||||||||    
T  28381687 acgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgt 28381739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 32505680 - 32505732
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||||||||||   |||||||| |||||||||||||    
T  32505680 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgt 32505732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 40613820 - 40613871
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||||||||||||||||| |||| |   |||||||||||||||||||||    
T  40613820 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccat 40613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 42257375 - 42257324
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccat 136  Q
    ||||||| ||||||||||||| |||| || ||||||| ||||||||||||||    
T  42257375 ggaaaatattacatagacaccctttatttctatacactcttgtacaccccat 42257324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 38273155 - 38273221
Alignment:
Q  180 gtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 246  Q
    ||||||||||||| | |  ||||||||||||||| ||||||||| || | ||||||||||| |||||    
T  38273155 gtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaag 38273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 40701656 - 40701602
Alignment:
Q  89 aatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||| ||| |||||    
T  40701656 aatgatacatagacaccttttatttccatacacccttgtacacccgatgcattag 40701602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 3440161 - 3440113
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccc 133  Q
    ||||||||||||||||||||| |||| ||  ||||||| ||||||||||    
T  3440161 ggaaaatgttacatagacaccctttatttccatacacctttgtacaccc 3440113  T

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Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 4060753 - 4060701
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| ||||||   |||||||| |||||||||||||    
T  4060753 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgt 4060701  T

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Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 38882846 - 38882897
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||| ||||| |||||| | || |||||||||||||||||||    
T  38882846 acgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgt 38882897  T

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Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 41758767 - 41758711
Alignment:
Q  87 aaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||| ||||| |   ||||| ||||||||||||||| ||||||    
T  41758767 aaaatgttacatagacacattttattctcatacatccttgtacaccccatatattag 41758711  T

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Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 152679 - 152622
Alignment:
Q  86 gaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  152679 gaaaatgttacatagacaccttttaattgcatacacccttgtacatcccatgtattag 152622  T

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Target: scaffold0018; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 152592 - 152513
Alignment:
Q  173 tgtacttgtgcggggtccatattgtcacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgtt 252  Q
    |||| ||||||||| |||||||   ||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  152592 tgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgtt 152513  T

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Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 8781 - 8839
Alignment:
Q  85 ggaaaatgttacatagacaccttttaattgtatacacccttgtacaccccatgtattag 143  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  8781 ggaaaatgttacatagacaccttttattcttatacacccttgtacaccccatatattag 8839  T

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Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 10141 - 10193
Alignment:
Q  199 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagggtgt 251  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||||| |||||    
T  10141 acgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgt 10193  T

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