View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_low_85 (Length: 237)
Name: NF18007_low_85
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_85 |
 | |
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| [»] scaffold0726 (1 HSPs) |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19110176 - 19109955
Alignment:
| Q |
1 |
gaatcaattttttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19110176 |
gaatcaattttttactatattttaatttcaatcacaaaaaatgagcaattgacagttgaaaataattgaacacttgaaatagatggtaatttaagtgaga |
19110077 |
T |
|
| Q |
101 |
tgtacgttgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcccttagaaccattgtcatatgagtccctctcataa |
200 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
19110076 |
tgcacattgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcctttagaaccattgtcatatgagtccctctcataa |
19109977 |
T |
|
| Q |
201 |
cattgaagtatacatattactt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
19109976 |
cattgaagtatacatattactt |
19109955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 45099153 - 45098941
Alignment:
| Q |
1 |
gaatcaattttttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgaga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
45099153 |
gaatcaattgtttactatattttaatttcaatcataaaaaatgagtaattgacagttgaaaataattgaaaacttgaaatagatggtaattgaagtgaga |
45099054 |
T |
|
| Q |
101 |
tgtacgttgttgaagaatagtcact--atcaatgtttacaaatttatagttaagataatatgagatcccttagaaccattgtcatatgagtccctctcat |
198 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||| |||| |||||||| |||||||||||||||||| |
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| T |
45099053 |
tgcacgttgttgaagaatagtcagttagtcaatgtttacaaatttatcgttaagataacatgagat-ccttccaaccattggcatatgagtccctctcat |
45098955 |
T |
|
| Q |
199 |
aacattgaagtata |
212 |
Q |
| |
|
|||||||||||||| |
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| T |
45098954 |
aacattgaagtata |
45098941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 18717265 - 18717464
Alignment:
| Q |
1 |
gaatcaattttttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgaga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18717265 |
gaatcaatttcttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgaga |
18717364 |
T |
|
| Q |
101 |
tgtacgttgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcccttagaaccattgtcatatgagtccctctcataa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
18717365 |
tgcacgttgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcccttagaactattgtcatatgagtccctctcataa |
18717464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 14465442 - 14465533
Alignment:
| Q |
11 |
tttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgagatgtacgtt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
14465442 |
tttattatattttaatttcaatcacaaaaaatgagtaattgatagttgaaaataattgaacac------tagatggaaattgaagtgagatgtacgtt |
14465533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29466799 - 29466580
Alignment:
| Q |
1 |
gaatcaattttttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgaga |
100 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
29466799 |
gaatcaattttttactat--tctaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacaattgaaatagatggtaattgaagtgaga |
29466702 |
T |
|
| Q |
101 |
tgtacgttgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcccttagaaccattgtcatatgagtccctctcataa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
29466701 |
tgcacgttgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcctttagaaccgttgttatatgagtccctctcataa |
29466602 |
T |
|
| Q |
201 |
cattgaagtatacatattactt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
29466601 |
cattgaagtatacatattactt |
29466580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3904 - 3683
Alignment:
| Q |
1 |
gaatcaattttttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
3904 |
gaatcaattttttactatattttaatttcaatcacaaaaaattagtaattgacagttgaaaataattgaatacttgaaatagatggtaattaaagtgaga |
3805 |
T |
|
| Q |
101 |
tgtacgttgttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcccttagaaccattgtcatatgagtccctctcataa |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
3804 |
tgcacgttgttgaaaaatagtcactatcaatgtttacaaatttataattaagataatataagatcctttagaaccattgtcatatgagtacctctcataa |
3705 |
T |
|
| Q |
201 |
cattgaagtatacatattactt |
222 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
3704 |
cattgaagtacacatattactt |
3683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 8441 - 8641
Alignment:
| Q |
9 |
tttttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgagatgtacgtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8441 |
tttttactatattttaatttcaatcacaaaaaatgagtaattgatagttgaaaataattgaacacttgaaatagatggtaattgaagtgagatgcacgtt |
8540 |
T |
|
| Q |
109 |
gttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcccttagaaccattgtcatatgagtccctctcataacattgaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8541 |
gttgaagaatagtcactatcaatgtttacaaatttatagttaagataatatgagatcc-------------tcatatgagtccctctcataacattgaag |
8627 |
T |
|
| Q |
209 |
tatacatattactt |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8628 |
tatacatattactt |
8641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 42956323 - 42956217
Alignment:
| Q |
38 |
aaaatgagtaattgacagttgaaaataattgaacacttgaaatagatggtaattgaagtgagatgtacgttgttgaagaatagtcactatcaatgtttac |
137 |
Q |
| |
|
||||| || |||||||| | |||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||| | ||| | ||||||||||| |
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|
| T |
42956323 |
aaaataagaaattgacaatgaaaaataattgaacacttgaaatagttggtaataaaagtgagatacacgttattgaagaacaatcaatgtcaatgtttac |
42956224 |
T |
|
| Q |
138 |
aaattta |
144 |
Q |
| |
|
||||||| |
|
|
| T |
42956223 |
aaattta |
42956217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 11232829 - 11232914
Alignment:
| Q |
59 |
aaaataattgaacacttgaaatagatggtaattgaagtgagatgtacgttgttgaagaatagtcactatcaatgtttacaaattta |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| | ||| ||||| || | ||| | |||||||||||||||||| |
|
|
| T |
11232829 |
aaaataattgaacacttgaaatagttggtaataaaagtgagatacatgttattgaaaaacaatcaatgtcaatgtttacaaattta |
11232914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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