View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_87 (Length: 237)
Name: NF18007_low_87
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 7039105 - 7039309
Alignment:
| Q |
17 |
agaaagatgtcatttgaagcagggcagtaaaacatgtgtgaaaaacattgaatatgagtggcttgacatttcaaagaattttcccctcaacaagggtaat |
116 |
Q |
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| T |
7039105 |
agaaagatgtcatttgaagcagggcagtaaaacatgtgtgaaaaacattgaatatgagtggcttgacatttcaaagaattttcccctcaacaagggtagt |
7039204 |
T |
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| Q |
117 |
atgaaatagcctataaacagcctctgttcggttaagaatccgatagtaaataaattcaacttgcaattgatagatagctagcccacatacttgagataca |
216 |
Q |
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| T |
7039205 |
atgaaatagcctataaacagcctctgttcggttaagaatccgatagtaaataaattcaacttgcaattgatagatagctagcccacatacttgagataca |
7039304 |
T |
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| Q |
217 |
atatt |
221 |
Q |
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||||| |
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| T |
7039305 |
atatt |
7039309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 7035608 - 7035740
Alignment:
| Q |
77 |
gcttgacatttcaaagaattttcccctcaacaagggtaatatgaaatagcctataaacagcctctgttcggttaagaatccgatagtaaataaattcaac |
176 |
Q |
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| T |
7035608 |
gcttgacatatcaaagaattttcccctcaacaaaggtagaatgaaatagccttcaaacagcctct-ttcggttaagaatccaatagt-aagaaattcaa- |
7035704 |
T |
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| Q |
177 |
ttgcaattgatagatagctagcccacatacttgagataca |
216 |
Q |
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| T |
7035705 |
ttgcaatt----gatagctaacccacatacttgagataca |
7035740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 7880936 - 7881006
Alignment:
| Q |
114 |
aatatgaaatagcctataaacagcctctgttcggttaagaatccgatagtaaataaattcaacttgcaatt |
184 |
Q |
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|||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7880936 |
aatatgaaatggcctataaacaacttctgttcggttaagaatccgatagtaaataaattcaacttgcaatt |
7881006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 7896854 - 7896984
Alignment:
| Q |
79 |
ttgacatttcaaagaattttcccctcaacaagggtaatatgaaatagcctataaacagcctctgttcggttaagaatccgatagtaaataaattcaactt |
178 |
Q |
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||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||| ||||| || |||||||| || |
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| T |
7896854 |
ttgacatatcaaagaattttcccctcaacaaaggtagaatgaaatagccttcaaacagcctct-ttcggttaagaatccaatagt-aagaaattcaa-tt |
7896950 |
T |
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| Q |
179 |
gcaattgatagatagctagcccacatacttgagataca |
216 |
Q |
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|||||| |||||||| |||||||| |||||||||| |
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| T |
7896951 |
gcaatt----gatagctaacccacataattgagataca |
7896984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 7880885 - 7880936
Alignment:
| Q |
17 |
agaaagatgtcatttgaagcagggcagtaaaacatgtgtgaaaaacattgaa |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7880885 |
agaaagatgtcatttgaagcagggcagtaaaacatgtgtgaaaaacattgaa |
7880936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 29380081 - 29380160
Alignment:
| Q |
85 |
tttcaaagaattttcccctcaacaagggtaatatgaaatagcctataaacagcctctgttcggttaagaatccgatagtaa |
165 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||| ||||||| |
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| T |
29380081 |
tttcaaagaattttcccttcaacaagggtagtatgaaatagcctttaaacagcctctgttgggttaa-aatccaatagtaa |
29380160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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