View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_88 (Length: 235)

Name: NF18007_low_88
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_88
NF18007_low_88
[»] chr6 (9 HSPs)
chr6 (1-216)||(6516240-6516455)
chr6 (59-216)||(6505310-6505467)
chr6 (56-210)||(6473231-6473385)
chr6 (56-144)||(6457275-6457363)
chr6 (49-145)||(6465234-6465330)
chr6 (49-145)||(6526273-6526369)
chr6 (80-145)||(6528094-6528159)
chr6 (65-207)||(1831986-1832128)
chr6 (56-133)||(6496586-6496663)
[»] chr7 (4 HSPs)
chr7 (56-124)||(3754016-3754084)
chr7 (59-145)||(46383318-46383404)
chr7 (56-122)||(46383849-46383914)
chr7 (54-123)||(4046155-4046224)
[»] chr1 (1 HSPs)
chr1 (104-198)||(35244261-35244355)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 6516240 - 6516455
Alignment:
Q  1 tattacacaggaggaaggtgctttcgtttttagtagtgatttgggagacggagtgtataatgatcatcattatcaattaggatattttctttatggaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6516240 tattacacaggaggaaggtgctttcgtttttagtagtgatttgggagacggagcgtataatgatcatcattatcaattaggatattttctttatggaatt 6516339  T
Q  101 gcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctattcacttatggaagactttatgagcttaagtttaaaatcgaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6516340 gcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctattcacttatggaagactttatgaacttaagtttaaaatcgaact 6516439  T
Q  201 caaattatacgcgttt 216  Q
    ||||||||||||||||    
T  6516440 caaattatacgcgttt 6516455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 6505467 - 6505310
Alignment:
Q  59 aatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctatt 158  Q
    ||||||||||| | ||| ||||||||||||||||| | ||| ||||||||||| ||||| |||||| ||||||||||||| ||||||   ||| ||||||    
T  6505467 aatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctatt 6505368  T
Q  159 cacttatggaagactttatgagcttaagtttaaaatcgaactcaaattatacgcgttt 216  Q
    ||||| ||||||| ||||||| ||||||  || |||||||||||||||||||||||||    
T  6505367 cacttgtggaagattttatgaacttaagcatagaatcgaactcaaattatacgcgttt 6505310  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 6473231 - 6473385
Alignment:
Q  56 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcct 155  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||| ||||||||||||||  ||||||| ||| ||||||   ||| |||    
T  6473231 tataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggtaagaaatataagcctcaagcct 6473330  T
Q  156 attcacttatggaagactttatgagcttaagtttaaaatcgaactcaaattatac 210  Q
    || |||| |||||||| ||||||| ||| ||   ||| ||||| |||||||||||    
T  6473331 atgcactcatggaagattttatgaccttgagcaaaaactcgaattcaaattatac 6473385  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 6457363 - 6457275
Alignment:
Q  56 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataa 144  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||  |||||||||||||| ||||| || ||||||||    
T  6457363 tataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaaagtataa 6457275  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 6465330 - 6465234
Alignment:
Q  49 cggagtgtataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 145  Q
    |||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||  ||||||||||||   ||||||||||||||||||    
T  6465330 cggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataag 6465234  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 6526369 - 6526273
Alignment:
Q  49 cggagtgtataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 145  Q
    |||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||    |||||||| |||||||||    
T  6526369 cggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggggtagaaagtataag 6526273  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 6528159 - 6528094
Alignment:
Q  80 ggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 145  Q
    ||||||||| |||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  6528159 ggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtataag 6528094  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 1831986 - 1832128
Alignment:
Q  65 catcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctattcactta 164  Q
    ||||||||||| |||||||| ||||| | |||||||||||||||||  ||||||||||||   ||||||||  ||||||||   ||| |||||||||| |    
T  1831986 catcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagagagtataagcctcaagcctattcactca 1832085  T
Q  165 tggaagactttatgagcttaagtttaaaatcgaactcaaatta 207  Q
    | || || ||||||| ||| |||  ||| || |||||||||||    
T  1832086 ttgaggattttatgaccttgagtagaaattcaaactcaaatta 1832128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 6496663 - 6496586
Alignment:
Q  56 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggt 133  Q
    ||||||||||||  | |||| |||||||| ||||||||||||||||| || |||  |||||||||  | |||||||||    
T  6496663 tataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattgacactgcatggggt 6496586  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 3754016 - 3754084
Alignment:
Q  56 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatcca 124  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| || ||||  ||||||||||||    
T  3754016 tataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatcca 3754084  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 46383404 - 46383318
Alignment:
Q  59 aatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 145  Q
    ||||||||||||||||| |||||||||| ||| ||||||||| ||||||| |  |||||||||||    ||||||||||||||||||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataag 46383318  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 46383914 - 46383849
Alignment:
Q  56 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatc 122  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||| |||||||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattgc-gtgcttgctaagattgatc 46383849  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 4046224 - 4046155
Alignment:
Q  54 tgtataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatcc 123  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||  || ||||||||    
T  4046224 tgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgcaaaaattgatcc 4046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 35244261 - 35244355
Alignment:
Q  104 gtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctattcacttatggaagactttatgagcttaagtttaaaatcgaa 198  Q
    ||||||||||||||||||||| | |||||||||||||||||    ||| |||||||||| ||| |||| ||||||| ||| ||| ||||||||||    
T  35244261 gtgcttgttaagattgatccaacttggggtaggaagtataaatctcaagcctattcactcatgaaagattttatgaacttgagtataaaatcgaa 35244355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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