View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_89 (Length: 230)
Name: NF18007_low_89
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 380396 - 380293
Alignment:
| Q |
79 |
gataaccataagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagc |
178 |
Q |
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| T |
380396 |
gataaccatgagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaaccttacctcttttagcatttgtgatcacgttcatcattgaagc |
380297 |
T |
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| Q |
179 |
ttct |
182 |
Q |
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|||| |
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| T |
380296 |
ttct |
380293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 382231 - 382140
Alignment:
| Q |
1 |
tacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagtt |
92 |
Q |
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| T |
382231 |
tacacaccagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagtt |
382140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 6300453 - 6300299
Alignment:
| Q |
1 |
tacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcatt |
100 |
Q |
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| T |
6300453 |
tacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaat |
6300354 |
T |
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| Q |
101 |
tgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttg |
156 |
Q |
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| T |
6300353 |
tgttgctagaaaagaaatac-aaaatgatgactaaacttgcctgatttagcgtttg |
6300299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 6307263 - 6307109
Alignment:
| Q |
1 |
tacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcatt |
100 |
Q |
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| T |
6307263 |
tacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaat |
6307164 |
T |
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| Q |
101 |
tgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttg |
156 |
Q |
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| T |
6307163 |
tgttgctagaaaagaaatac-aaaatgatgactaaacttgcctgatttagcgtttg |
6307109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30863990 - 30864065
Alignment:
| Q |
1 |
tacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagata |
76 |
Q |
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| T |
30863990 |
tacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatcgtaagata |
30864065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
| Q |
10 |
gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat |
87 |
Q |
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| T |
30035413 |
gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat |
30035336 |
T |
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