View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_92 (Length: 227)
Name: NF18007_low_92
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 21260045 - 21260183
Alignment:
| Q |
1 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaatgtagattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21260045 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagattt |
21260144 |
T |
|
| Q |
101 |
ggaaagaaataaaatgagacctactctatcaatttgaca |
139 |
Q |
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| T |
21260145 |
ggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 21264626 - 21264764
Alignment:
| Q |
1 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaatgtagattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264626 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagattt |
21264725 |
T |
|
| Q |
101 |
ggaaagaaataaaatgagacctactctatcaatttgaca |
139 |
Q |
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| T |
21264726 |
ggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 6847769 - 6847908
Alignment:
| Q |
1 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaatgtagattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6847769 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagattt |
6847868 |
T |
|
| Q |
101 |
ggaaagaaataaaatgagacctactctatcaatttgacaa |
140 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
6847869 |
ggaaagaaataaaatgagacctactgtatcagtttaacaa |
6847908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6843166 - 6843296
Alignment:
| Q |
1 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaatgtagattt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6843166 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactcttgtaatgtagattt |
6843265 |
T |
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| Q |
101 |
ggaaagaaataaaatgagacctactctatca |
131 |
Q |
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||||||||||||||||||||||||| ||||| |
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|
| T |
6843266 |
ggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 47805198 - 47805337
Alignment:
| Q |
1 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaatgtagattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805198 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagattt |
47805297 |
T |
|
| Q |
101 |
ggaaagaaataaaatgagacctactctatcaatttgacaa |
140 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||| |
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|
| T |
47805298 |
ggaaagaaataaaatgagacctactgtatcagtttaacaa |
47805337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 47800616 - 47800746
Alignment:
| Q |
1 |
gatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaatgtagattt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47800616 |
gatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagattt |
47800715 |
T |
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| Q |
101 |
ggaaagaaataaaatgagacctactctatca |
131 |
Q |
| |
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||||||||||||||||||||||||| ||||| |
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| T |
47800716 |
ggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 29269788 - 29269829
Alignment:
| Q |
178 |
acaagagccataaagtgttgttgctgctacacaggttctgct |
219 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| |
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| T |
29269788 |
acaagagccatacagtgttgttgctgctacacaagttctgct |
29269829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 31289581 - 31289542
Alignment:
| Q |
178 |
acaagagccataaagtgttgttgctgctacacaggttctg |
217 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||| |
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| T |
31289581 |
acaagagccatacagtgttgtttctgctacacaggttctg |
31289542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 26853986 - 26853949
Alignment:
| Q |
178 |
acaagagccataaagtgttgttgctgctacacaggttc |
215 |
Q |
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|||||||||||| |||||||||||||||||||| |||| |
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| T |
26853986 |
acaagagccatacagtgttgttgctgctacacaagttc |
26853949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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