View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_96 (Length: 224)

Name: NF18007_low_96
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_96
NF18007_low_96
[»] chr5 (5 HSPs)
chr5 (1-210)||(30271662-30271871)
chr5 (1-83)||(29360435-29360517)
chr5 (18-83)||(29587669-29587734)
chr5 (150-210)||(29360347-29360407)
chr5 (36-77)||(28735824-28735865)
[»] chr8 (3 HSPs)
chr8 (34-84)||(5071682-5071732)
chr8 (21-71)||(28478065-28478115)
chr8 (30-82)||(18374267-18374319)
[»] chr2 (2 HSPs)
chr2 (25-71)||(22556234-22556280)
chr2 (25-74)||(32199512-32199561)
[»] chr6 (1 HSPs)
chr6 (37-74)||(10338617-10338654)
[»] chr3 (1 HSPs)
chr3 (31-72)||(31652450-31652491)
[»] chr1 (1 HSPs)
chr1 (18-71)||(3523380-3523433)
[»] chr4 (1 HSPs)
chr4 (15-71)||(22402369-22402425)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30271662 - 30271871
Alignment:
Q  1 accaaatacgacctgatactgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtcagcggccaacaccgtcac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30271662 accaaatacgacctgatactgacacgtaaacaccagtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtcagcggccaacaccatcac 30271761  T
Q  101 gtgtcaaacaccatatacatctttaatctgaagtagcagtgctacaaagcttatatcattacaaccgattaagaagagttgattgattaacttgcctggg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  30271762 gtgtcaaacaccatatacacctttaatctgaagtagcagtgctacaaagcttatatcgttacaaccgattaaaaagagttgattgaataacttgcctggg 30271861  T
Q  201 ggaagaacct 210  Q
    ||||||||||    
T  30271862 ggaagaacct 30271871  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29360517 - 29360435
Alignment:
Q  1 accaaatacgacctgatactgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtca 83  Q
    ||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29360517 accaaatacaaactgataccgacacgtaaacaccagtaatgatttaagaatataaaagtgattgaatgtaatcatatatgtca 29360435  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 29587669 - 29587734
Alignment:
Q  18 actgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtca 83  Q
    |||| |||||||||||||||||| ||||||||| || ||||||||| ||||||| || ||||||||    
T  29587669 actgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatatgtca 29587734  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 29360407 - 29360347
Alignment:
Q  150 cttatatcattacaaccgattaagaagagttgattgattaacttgcctgggggaagaacct 210  Q
    |||||||  |||||||  ||||||||| ||||||||||||||||||||| |||||||||||    
T  29360407 cttatatggttacaacaaattaagaagtgttgattgattaacttgcctgagggaagaacct 29360347  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 28735865 - 28735824
Alignment:
Q  36 gtaatgatttaagaatatagaagtgattgaatgtaatcatat 77  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||    
T  28735865 gtaataatttaagaaaatagaagtgattgaatgtaattatat 28735824  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 5071682 - 5071732
Alignment:
Q  34 cggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtcag 84  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||| ||||||    
T  5071682 cggtaataacttaagaaaatacaagtgattgaatgtaatcatatgtgtcag 5071732  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 28478115 - 28478065
Alignment:
Q  21 gacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 71  Q
    |||||||| ||||| ||||| |||||| || ||||||||||||||||||||    
T  28478115 gacacgtagacacccgtaataatttaaaaaaatagaagtgattgaatgtaa 28478065  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 18374319 - 18374267
Alignment:
Q  30 acaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtc 82  Q
    ||||||||||| ||||||||| ||  | ||||||||||| |||||||||||||    
T  18374319 acaccggtaataatttaagaaaatgaatgtgattgaatgcaatcatatatgtc 18374267  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 22556234 - 22556280
Alignment:
Q  25 cgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 71  Q
    |||| |||| |||||| ||||||||| ||||||||||||||||||||    
T  22556234 cgtagacacaggtaataatttaagaaaatagaagtgattgaatgtaa 22556280  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 32199512 - 32199561
Alignment:
Q  25 cgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatca 74  Q
    |||||||||||||||| ||||||||| ||| ||||| | |||||||||||    
T  32199512 cgtaaacaccggtaataatttaagaaaataaaagtggtcgaatgtaatca 32199561  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 10338617 - 10338654
Alignment:
Q  37 taatgatttaagaatatagaagtgattgaatgtaatca 74  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  10338617 taataatttaagaaaatagaagtgattgaatgtaatca 10338654  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 31652450 - 31652491
Alignment:
Q  31 caccggtaatgatttaagaatatagaagtgattgaatgtaat 72  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  31652450 caccgataataatttaagaaaatagaagtgattgaatgtaat 31652491  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 3523380 - 3523433
Alignment:
Q  18 actgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 71  Q
    ||||||||||| |||||| |||| |||| | || ||||||||||||||||||||    
T  3523380 actgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 22402369 - 22402425
Alignment:
Q  15 gatactgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 71  Q
    |||||||||| ||| | ||||||||| | || |||| ||||||||||||||||||||    
T  22402369 gatactgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaa 22402425  T

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