View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_97 (Length: 223)
Name: NF18007_low_97
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 52871005 - 52871199
Alignment:
| Q |
14 |
attattcttagatccatctcaaccgtataccatttccctgttgcttaatacatctattaccatttctctgtttcttctttctccttcaacgcaagacttt |
113 |
Q |
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| T |
52871005 |
attattcttagatccatctcaaccgtataccatttccctgttgcttaatacatctattaccatttctctgtttcttctttctccttcaacacaagacttt |
52871104 |
T |
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| Q |
114 |
tctctcttacaccatgtttattgttctttcaactaaatgagcaactcataattttcattgccatacgattaattcttttctatttctgaaataat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52871105 |
tctctcttacaccatgtttattgttctttcaactaaatgagcaactcataattttcattgccatacgattaattcttttctatttctgaaataat |
52871199 |
T |
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