View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18008_high_2 (Length: 395)

Name: NF18008_high_2
Description: NF18008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18008_high_2
NF18008_high_2
[»] chr5 (9 HSPs)
chr5 (16-295)||(3571784-3572063)
chr5 (299-363)||(5384403-5384467)
chr5 (299-386)||(41905170-41905257)
chr5 (298-363)||(19523977-19524042)
chr5 (299-363)||(18677971-18678035)
chr5 (300-380)||(40059368-40059448)
chr5 (301-367)||(1273086-1273152)
chr5 (301-363)||(12947909-12947971)
chr5 (299-380)||(6629726-6629807)
[»] chr2 (9 HSPs)
chr2 (301-386)||(4701521-4701606)
chr2 (302-363)||(10368442-10368503)
chr2 (299-363)||(10367234-10367298)
chr2 (300-381)||(23178921-23179002)
chr2 (300-381)||(23590178-23590259)
chr2 (299-367)||(4829460-4829528)
chr2 (299-363)||(12958412-12958475)
chr2 (299-363)||(12959762-12959826)
chr2 (299-363)||(37869097-37869161)
[»] chr8 (9 HSPs)
chr8 (300-363)||(37276300-37276363)
chr8 (299-369)||(41866889-41866959)
chr8 (301-374)||(7487433-7487506)
chr8 (300-369)||(36940084-36940153)
chr8 (298-386)||(10052098-10052186)
chr8 (298-367)||(37323342-37323411)
chr8 (298-363)||(38591064-38591129)
chr8 (298-363)||(41867973-41868038)
chr8 (299-363)||(10053801-10053865)
[»] chr7 (18 HSPs)
chr7 (307-381)||(14109108-14109182)
chr7 (307-381)||(14419065-14419139)
chr7 (301-386)||(38408308-38408393)
chr7 (299-378)||(4974091-4974170)
chr7 (298-363)||(46458770-46458835)
chr7 (302-363)||(48671076-48671137)
chr7 (299-363)||(46457065-46457129)
chr7 (300-367)||(4858397-4858464)
chr7 (301-360)||(43930316-43930375)
chr7 (299-381)||(14107827-14107909)
chr7 (299-381)||(14417784-14417866)
chr7 (302-363)||(25154993-25155054)
chr7 (299-344)||(43931942-43931987)
chr7 (299-347)||(13446731-13446779)
chr7 (321-369)||(14206690-14206738)
chr7 (321-369)||(14215380-14215428)
chr7 (299-363)||(45719610-45719674)
chr7 (299-363)||(46674991-46675055)
[»] chr4 (7 HSPs)
chr4 (299-387)||(39590936-39591024)
chr4 (298-386)||(29686250-29686338)
chr4 (299-367)||(37558993-37559061)
chr4 (299-381)||(35789629-35789711)
chr4 (301-367)||(55953905-55953971)
chr4 (299-363)||(21104367-21104431)
chr4 (299-363)||(33377421-33377485)
[»] chr1 (3 HSPs)
chr1 (298-386)||(44977215-44977303)
chr1 (299-367)||(50678361-50678429)
chr1 (302-381)||(29264870-29264948)
[»] scaffold0007 (1 HSPs)
scaffold0007 (301-372)||(145917-145988)
[»] chr3 (3 HSPs)
chr3 (299-369)||(51825672-51825742)
chr3 (299-363)||(49122059-49122123)
chr3 (299-367)||(41387486-41387554)
[»] scaffold0051 (1 HSPs)
scaffold0051 (329-367)||(22153-22190)
[»] chr6 (1 HSPs)
chr6 (300-372)||(33802065-33802137)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 3572063 - 3571784
Alignment:
Q  16 atattccacccaccagcaactgatgatgacgccaaaagaatgattatttggtgttaacgtttgcggttgccgggcccgggattggaaaaagtgaaagaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3572063 atattccacccaccagcaactgatgatgacgccaaaagaatgattatttggtgttaacgtttgcggttgccgggcccgggattggaaaaagtgaaagaga 3571964  T
Q  116 atgaaacattgatcatatcatcaaacggtgagcacgaatggtcattcattattaaaaagagagacaaagattgtattgtactactactagtaaaatgtca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3571963 atgaaacattgatcatatcatcaaacggtgagcacgaatggtcattcattattaaaaagagagacaaagattgtattgtactactactagtaaaatgtca 3571864  T
Q  216 atcagaattatacttcactacattaatctcttaaaaatacataatcatatgtataagtggtgacacaagacgaataattt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3571863 atcagaattatacttcactacattaatctcttaaaaatacataatcatatgtataagtggcgacacaagacgaataattt 3571784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 5384467 - 5384403
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||| | ||||||||||    
T  5384467 ggcttaatacatcatttggttccttaatttatttttgattttcaatttgatcccctaactataaa 5384403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 41905170 - 41905257
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatg 386  Q
    ||||||||| ||||||||||  ||||| | ||||||| |||||| |||| || | |||||||||||||| ||||||||||||| ||||    
T  41905170 ggcttaatacatcatttggtcccttaacttatttttggttttcattttggtcccctaactataaaatgtcttaaactggtcccttatg 41905257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 19523977 - 19524042
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||||||||||||||||||  ||||| | ||||||| |||||| |||| || ||||||||||||    
T  19523977 tggcttaatatatcatttggtcccttaacttatttttggttttcaatttggtcccttaactataaa 19524042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 18677971 - 18678035
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||| ||||||||||  ||||| | ||||||| |||||||||||||| | ||||||||||    
T  18677971 ggcttaatacatcatttggtcccttaacttatttttggttttcactttgatcccctaactataaa 18678035  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 40059448 - 40059368
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcc 380  Q
    ||||||||||| |||||||  ||||| | ||||||| |||||| ||||||| | ||||||| || ||||||||| ||||||    
T  40059448 gcttaatatataatttggtcccttaacttatttttggttttcattttgatcccctaactattaagtgttttaaattggtcc 40059368  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 1273086 - 1273152
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    ||||||| ||||||||||  ||||||| ||||||| |||||| |||| ||  |||||||||||||||    
T  1273086 cttaatacatcatttggtcccttaatttatttttggttttcattttggtcctttaactataaaatgt 1273152  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 12947909 - 12947971
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||||| ||  ||||| | |||||||||||||| ||||||| | ||||||||||    
T  12947909 cttaatatatcatttagtcccttaacttatttttgattttcattttgatcccctaactataaa 12947971  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 6629726 - 6629807
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcc 380  Q
    ||||||||| ||||||||||  ||||| | |||| || ||||||||||| || | |||||||||| ||| | ||||||||||    
T  6629726 ggcttaatacatcatttggtcccttaacttatttgtggttttcactttggtcccctaactataaagtgtctcaaactggtcc 6629807  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 4701606 - 4701521
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatg 386  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||||| | |||||||||| ||| | |||||| |||| ||||    
T  4701606 cttaatatatcatttggtcccttaatttatttttgattttcactttgatcccctaactataaagtgtctcaaactgatcccttatg 4701521  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 10368503 - 10368442
Alignment:
Q  302 ttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||| ||||||||||  ||||||| |||||||||||||| ||||||| | ||||||||||    
T  10368503 ttaatacatcatttggtcccttaatttatttttgattttcaatttgatcccctaactataaa 10368442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 10367234 - 10367298
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||  ||||||| ||||| | |||||||||||||| |||| | |||||||||||||    
T  10367234 ggcttaatatattgtttggttccttaacttatttttgattttcaatttggtttcttaactataaa 10367298  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 23179002 - 23178921
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    |||||||  ||||||||||  ||||| | ||||||  ||||||||||| || | |||||||||| ||||||||| |||||||    
T  23179002 gcttaatccatcatttggtcccttaacttatttttagttttcactttggtcccctaactataaactgttttaaattggtccc 23178921  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 23590259 - 23590178
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    |||||||  ||||||||||  ||||| | ||||||  ||||||||||| || | |||||||||| ||||||||| |||||||    
T  23590259 gcttaatccatcatttggtcccttaacttatttttagttttcactttggtcccctaactataaactgttttaaattggtccc 23590178  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 4829460 - 4829528
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    ||||||||| |||||||| || ||||| | ||||||  ||||||||||  || ||||||||||||||||    
T  4829460 ggcttaatacatcatttgattccttaacttatttttcgttttcactttagtcccttaactataaaatgt 4829528  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 12958412 - 12958475
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||||||||||| ||||| | ||||||| |||| | ||||||| | ||||||||||    
T  12958412 ggcttaatatatcatttggtt-cttaacttatttttggtttttaatttgatcccctaactataaa 12958475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 12959826 - 12959762
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||| ||||||| ||||| | |||||||||||| | |||| || |||||| |||||    
T  12959826 ggcttaatatatcgtttggttccttaacttatttttgatttttaatttggtcccttaacaataaa 12959762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 37869161 - 37869097
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||  ||||||  ||||| | |||||||||||||| |||| || ||||||||||||    
T  37869161 ggcttaatatattgtttggtcccttaacttatttttgattttcaatttggtcccttaactataaa 37869097  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 37276363 - 37276300
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||||| ||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||    
T  37276363 gcttaatacatcatttggtcccttaatttatttttgattttcactttgatcccttaactataaa 37276300  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 41866889 - 41866959
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttt 369  Q
    ||||||||| | ||||||||  ||||| | |||||||||||||||||||||| |||||||||||| |||||    
T  41866889 ggcttaatacaccatttggtcccttaacttatttttgattttcactttgatcccttaactataaagtgttt 41866959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 7487506 - 7487433
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaac 374  Q
    ||||||| ||||||||||   |||||| ||||||  |||||||||||||| | |||||||||||||| ||||||    
T  7487506 cttaatacatcatttggtcctttaatttatttttcgttttcactttgatcccctaactataaaatgtcttaaac 7487433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 36940153 - 36940084
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttt 369  Q
    |||||||| ||||||||||  ||||| | ||||||| |||||||||||||| | |||||||||| |||||    
T  36940153 gcttaatacatcatttggtcccttaacttatttttggttttcactttgatcccctaactataaagtgttt 36940084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 10052098 - 10052186
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatg 386  Q
    |||||||||||||||||||||  ||||| | ||| ||||||||||||||| || | ||| |||||| ||| | ||| ||||||| ||||    
T  10052098 tggcttaatatatcatttggtcccttaacttattcttgattttcactttggtcccctaattataaagtgtctcaaattggtcccttatg 10052186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 37323342 - 37323411
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    |||||||||| ||||||||||  ||||||| ||||||| |||||| |||| |  | ||||||||||||||    
T  37323342 tggcttaatacatcatttggtcccttaatttatttttggttttcaatttggttccctaactataaaatgt 37323411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 38591129 - 38591064
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||||||| ||||||||||  ||||| | |||||||||||||| |||| || | ||||||||||    
T  38591129 tggcttaatacatcatttggtcccttaacttatttttgattttcaatttggtcccctaactataaa 38591064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 41868038 - 41867973
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||||||| ||||||||||  ||||||| ||||||  ||||||||||| || | ||||||||||    
T  41868038 tggcttaatacatcatttggtcccttaatttatttttagttttcactttggtcccctaactataaa 41867973  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 10053865 - 10053801
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||| ||||||| ||  ||||| | ||||||| ||||||||||| || ||||||||||||    
T  10053865 ggcttaatacatcatttagtcccttaacttatttttggttttcactttggtcccttaactataaa 10053801  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 14109182 - 14109108
Alignment:
Q  307 atatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    ||||||||||||  ||||| | |||||| |||||||||||| || |||||||||||||||| | |||||||||||    
T  14109182 atatcatttggtcccttaacttatttttaattttcactttggtcccttaactataaaatgtctcaaactggtccc 14109108  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 14419139 - 14419065
Alignment:
Q  307 atatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    ||||||||||||  ||||| | |||||| |||||||||||| || |||||||||||||||| | |||||||||||    
T  14419139 atatcatttggtcccttaacttatttttaattttcactttggtcccttaactataaaatgtctcaaactggtccc 14419065  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 38408393 - 38408308
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatg 386  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||| ||   |||||||||| ||| | ||| ||||||| ||||    
T  38408393 cttaatatatcatttggtcccttaatttatttttgattttcactttggtcctctaactataaagtgtctcaaattggtcccttatg 38408308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 4974170 - 4974091
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggt 378  Q
    ||||||||| ||||||| ||  ||||||| |||||  ||||||| ||||||||||||||||| ||| |||||||| ||||    
T  4974170 ggcttaatagatcatttagtcccttaatttattttcaattttcaatttgatctcttaactattaaacgttttaaattggt 4974091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 46458835 - 46458770
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||||||| ||| ||||||  ||||| |||||||||||||||| |||| || ||||||||||||    
T  46458835 tggcttaatacatcgtttggtcccttaagtaatttttgattttcaatttggtcccttaactataaa 46458770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 48671076 - 48671137
Alignment:
Q  302 ttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||| ||||||||||  ||||||| ||||||| |||| | ||||||||||||||||||||    
T  48671076 ttaatacatcatttggtctcttaatttatttttggtttttaatttgatctcttaactataaa 48671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 46457065 - 46457129
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||| ||| ||||||| ||||| | ||||||| |||||| ||||||| ||||||||||||    
T  46457065 ggcttaatacatcgtttggttccttaacttatttttggttttcaatttgatcccttaactataaa 46457129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 4858464 - 4858397
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    |||||||| ||||||||||  ||||| | ||||||  |||||||||||||| | ||||||||||||||    
T  4858464 gcttaatacatcatttggtcccttaacttatttttagttttcactttgatcccctaactataaaatgt 4858397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 43930316 - 43930375
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactat 360  Q
    ||||||||||||||||||  ||||| | ||||||||||||||||||| || | |||||||    
T  43930316 cttaatatatcatttggtcccttaacttatttttgattttcactttggtcccctaactat 43930375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 14107827 - 14107909
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    ||||||||| |||||||||| | |||| | ||||||| |||||| |||| || |||||||||||| ||| | ||| |||||||    
T  14107827 ggcttaatacatcatttggtcatttaacttatttttggttttcattttggtcccttaactataaagtgtctcaaagtggtccc 14107909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 14417784 - 14417866
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    ||||||||| |||||||||| | |||| | ||||||| |||||| |||| || |||||||||||| ||| | ||| |||||||    
T  14417784 ggcttaatacatcatttggtcatttaacttatttttggttttcattttggtcccttaactataaagtgtctcaaagtggtccc 14417866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 25155054 - 25154993
Alignment:
Q  302 ttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    |||||| ||||||||||  ||||| | ||||||| |||||| ||||||| ||||||||||||    
T  25155054 ttaatacatcatttggtcccttaacttatttttggttttcaatttgatcccttaactataaa 25154993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 43931987 - 43931942
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcact 344  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||||||    
T  43931987 ggcttaatacatcatttggttccttaatttattttttattttcact 43931942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 13446779 - 13446731
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttg 347  Q
    ||||||||| |||||||||| |||||| | ||||||| |||||||||||    
T  13446779 ggcttaatacatcatttggtcacttaacttatttttggttttcactttg 13446731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 14206690 - 14206738
Alignment:
Q  321 cttaattaatttttgattttcactttgatctcttaactataaaatgttt 369  Q
    ||||||| ||||||| ||||||||||| || | ||||||||||||||||    
T  14206690 cttaatttatttttggttttcactttggtcgcctaactataaaatgttt 14206738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 14215380 - 14215428
Alignment:
Q  321 cttaattaatttttgattttcactttgatctcttaactataaaatgttt 369  Q
    ||||||| ||||||| ||||||||||| || | ||||||||||||||||    
T  14215380 cttaatttatttttggttttcactttggtcgcctaactataaaatgttt 14215428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 45719610 - 45719674
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||  ||||||   |||||| |||||||||||||| ||||||| | ||||||||||    
T  45719610 ggcttaatatatgctttggtcctttaatttatttttgattttcagtttgatcccctaactataaa 45719674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 46675055 - 46674991
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||| |||||||| |  ||||| | ||||||| |||||| ||||||| ||||||||||||    
T  46675055 ggcttaatacatcatttgatcccttaacttatttttggttttcaatttgatcccttaactataaa 46674991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 39590936 - 39591024
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatgc 387  Q
    ||||||||| ||||||||||  ||||| | ||||||| ||||||||||| || | |||||||||| ||| | ||||||||||| |||||    
T  39590936 ggcttaatacatcatttggtcccttaacttatttttggttttcactttggtcccctaactataaagtgtctcaaactggtcccttatgc 39591024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 29686250 - 29686338
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatg 386  Q
    |||||||||| ||||||| ||  ||||| | ||||||| ||||||||||| || |||||||||||| ||| | ||| ||||||| ||||    
T  29686250 tggcttaatacatcatttagtcccttaacttatttttggttttcactttggtcccttaactataaattgtctcaaattggtcccttatg 29686338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 37558993 - 37559061
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    ||||||||| ||||||||||| ||||| | ||||||| |||||| |||| || | ||||||||||||||    
T  37558993 ggcttaatacatcatttggttccttaacttatttttggttttcaatttggtcccctaactataaaatgt 37559061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 35789711 - 35789629
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    ||||||||| ||||||| ||  ||||| | ||||||| ||||||||||| || | |||||||||| ||||| |||||| ||||    
T  35789711 ggcttaatacatcatttagtctcttaacttatttttggttttcactttggtcccgtaactataaagtgtttcaaactgatccc 35789629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 55953971 - 55953905
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    |||||||||||||||| |  ||||| | |||||||||||||| |||| || | ||||||||||||||    
T  55953971 cttaatatatcatttgatcccttaacttatttttgattttcaatttggtcccataactataaaatgt 55953905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 21104431 - 21104367
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||||||||||| ||||| | ||||||  |||||| |||| || | ||||||||||    
T  21104431 ggcttaatatatcatttggttccttaaattattttttgttttcattttggtcccctaactataaa 21104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 33377485 - 33377421
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||| ||||||||||  ||||| | |||||||||||||| |||| || | ||||||||||    
T  33377485 ggcttaatacatcatttggtcccttaacttatttttgattttcaatttggtcccctaactataaa 33377421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 44977215 - 44977303
Alignment:
Q  298 tggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtcccctatg 386  Q
    |||||||||| || |||||||  ||||| | ||||||| ||||||||||| || | |||||||||| ||| ||||||||||||| ||||    
T  44977215 tggcttaatacattatttggtcccttaacttatttttggttttcactttggtcccctaactataaagtgtcttaaactggtcccttatg 44977303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 50678361 - 50678429
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    ||||||||| || |||||||  ||||| | |||||||| ||||| ||||||| ||||||||||||||||    
T  50678361 ggcttaatacatgatttggtcccttaacttatttttgaatttcattttgatcccttaactataaaatgt 50678429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 381
Target Start/End: Original strand, 29264870 - 29264948
Alignment:
Q  302 ttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaaactggtccc 381  Q
    |||||||||||||||||  ||||| | |||||||||||||| |||||||   |||||||||||||| ||||  |||||||    
T  29264870 ttaatatatcatttggtc-cttaacttatttttgattttcaatttgatcctctaactataaaatgtcttaatttggtccc 29264948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 145988 - 145917
Alignment:
Q  301 cttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaa 372  Q
    ||||||| ||||||||||| ||||||| ||||||| |||||| ||| ||| | |||||||||||||| ||||    
T  145988 cttaatacatcatttggtttcttaatttatttttggttttcaatttaatcccctaactataaaatgtcttaa 145917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 51825742 - 51825672
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttt 369  Q
    ||||||||||||||||||||  ||||| | |||||||  |||||||||| || |||||||||||| |||||    
T  51825742 ggcttaatatatcatttggtcccttaacttatttttggatttcactttggtcccttaactataaagtgttt 51825672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 49122123 - 49122059
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaa 363  Q
    ||||||||||||||||||||   |||| | ||||||| |||||| |||| |||||||||||||||    
T  49122123 ggcttaatatatcatttggtcctttaacttatttttggttttcattttggtctcttaactataaa 49122059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 41387554 - 41387486
Alignment:
Q  299 ggcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgt 367  Q
    ||||||||| ||||||||||  ||||| | ||||||| |||||| |||| || | ||||||||||||||    
T  41387554 ggcttaatacatcatttggtcccttaacttatttttggttttcaatttggtcccctaactataaaatgt 41387486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 22153 - 22190
Alignment:
Q  329 atttttgattttcactttgatctcttaactataaaatgt 367  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  22153 atttttgattttcactttgatctc-taactataaaatgt 22190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 33802137 - 33802065
Alignment:
Q  300 gcttaatatatcatttggttacttaattaatttttgattttcactttgatctcttaactataaaatgttttaa 372  Q
    |||||||| ||||||||||  ||||| | ||||||| ||||||||||| || | |||||||||| ||| ||||    
T  33802137 gcttaatacatcatttggtcccttaacttatttttggttttcactttggtcccctaactataaagtgtcttaa 33802065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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