View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18008_high_3 (Length: 384)
Name: NF18008_high_3
Description: NF18008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18008_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 7142335 - 7141977
Alignment:
| Q |
10 |
ataatactttgtgagattgcatgttcaaatgaattgcaaagtccatgacatgatcattgtaccgttgtgatcccctgctatggaatcatgatattcattt |
109 |
Q |
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| T |
7142335 |
ataatactttgtgagattgcatgttcaaatgaattgcaaagtccatgacatgatcattgtatcgtagtgatcccctgctatggaatcatgatattcattt |
7142236 |
T |
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| Q |
110 |
gatggtcgtggtaaagctccattgatgaagtgatgtatgtactttgatcttaaagatattgtcatcacaagtgaccaagattagtaattgttaccatata |
209 |
Q |
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| T |
7142235 |
gatggtcgtggtaaagctccattgatgaagtgatgcatgtactttgatcttaaagctattgtcatcacaagtgaccaagattagtaattgttaccatata |
7142136 |
T |
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| Q |
210 |
gtaataatggagtaacaagaagaatgtgtggattttcactcggttgcatgaaataggcgctaagagtatgattttggtatcctttgtttttggtgactgt |
309 |
Q |
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| T |
7142135 |
gtaataatggagtaacaagaagaatgtgtggattttcactcgggtgcatgaaataggcgctaagagtatgattttggtatcctttgtttttggtgactgt |
7142036 |
T |
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| Q |
310 |
gttcaccatcaatattttcaaccgacttcaacatacttgttgataaagaatgaaaacag |
368 |
Q |
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| T |
7142035 |
gttcaccatcaatattttcaaccgacttcaacatacttgttgataaagaatgaaaacag |
7141977 |
T |
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