View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18008_low_1 (Length: 428)
Name: NF18008_low_1
Description: NF18008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18008_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 55377461 - 55377045
Alignment:
| Q |
1 |
tattatattctcatttctcacctcactcttttctttttgatgcagcacccaaaacaactacaacaagacactgtattttgtcttcttcaacggcactcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55377461 |
tattatattctcatttctcacctcactcttttctttttgatgcagcacccaaaacaactacaacaagacactgtattttgtcttcttcaacggcactcct |
55377362 |
T |
|
| Q |
101 |
tgatttcaaatttgatgttgctcctgctgaatctgaaaactcaccaccttggccctatgcctctcaggtaattaaggttatcaatttcttaatttcagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55377361 |
tgatttcaaatttgatgttgctcctgctgaatctgaaaactcaccaccttggccctatgcctctcaggtaattaaggttatcaatttcttaatttcagtt |
55377262 |
T |
|
| Q |
201 |
tcacccttcacttccttgcattgcctccaaccacaaactaactatatta-----tattcaggcacactcctcctcctcatctgtagaatcacttcttact |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55377261 |
tcacccttcacttccttgcattgcctccaaccacaaactaactatattatattatattcaggcacactcctcctcctcatctgtagaatcacttcttact |
55377162 |
T |
|
| Q |
296 |
agtgaagacgctgttatagctgctgctgcttccgaagctcttactcttgctaaggctgctgcaaagcttgcaaaggatgctactctcttagtcaataaca |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55377161 |
agtgaagacgctgttatagctgctgctgcttccgaagctcttactcttgctaaggctgctgcaaagcttgcaaaggatgctactctcttagtcaataaca |
55377062 |
T |
|
| Q |
396 |
agcccccacaacataat |
412 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
55377061 |
agctcccacaacataat |
55377045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University