View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18008_low_5 (Length: 251)

Name: NF18008_low_5
Description: NF18008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18008_low_5
NF18008_low_5
[»] chr7 (20 HSPs)
chr7 (136-243)||(14109013-14109118)
chr7 (136-243)||(14418970-14419075)
chr7 (5-91)||(14108882-14108968)
chr7 (5-91)||(14418839-14418925)
chr7 (164-227)||(4857284-4857347)
chr7 (138-228)||(4167533-4167623)
chr7 (140-239)||(24494997-24495096)
chr7 (144-227)||(38406101-38406184)
chr7 (171-239)||(35315199-35315267)
chr7 (136-227)||(46458655-46458746)
chr7 (5-91)||(38406236-38406322)
chr7 (15-91)||(4167670-4167746)
chr7 (5-69)||(40930645-40930708)
chr7 (140-218)||(40930510-40930588)
chr7 (138-227)||(26406208-26406297)
chr7 (165-239)||(13286965-13287039)
chr7 (187-239)||(14107903-14107955)
chr7 (187-239)||(14417860-14417912)
chr7 (53-91)||(18801434-18801472)
chr7 (55-91)||(19848695-19848731)
[»] chr8 (32 HSPs)
chr8 (140-239)||(44103242-44103341)
chr8 (140-236)||(21961897-21961993)
chr8 (136-227)||(117131-117222)
chr8 (136-222)||(39546619-39546705)
chr8 (136-249)||(13366992-13367105)
chr8 (136-227)||(7486160-7486251)
chr8 (140-239)||(13513491-13513590)
chr8 (140-239)||(13603024-13603123)
chr8 (147-248)||(39325787-39325888)
chr8 (140-239)||(10052175-10052274)
chr8 (140-239)||(21670135-21670234)
chr8 (15-86)||(41522542-41522613)
chr8 (138-228)||(41522632-41522722)
chr8 (140-219)||(12281726-12281805)
chr8 (136-239)||(13363520-13363623)
chr8 (137-239)||(19913563-19913665)
chr8 (140-205)||(21267237-21267302)
chr8 (136-205)||(37276185-37276254)
chr8 (136-227)||(36070261-36070352)
chr8 (140-219)||(36756155-36756234)
chr8 (140-227)||(36938764-36938851)
chr8 (5-91)||(7486296-7486381)
chr8 (136-204)||(44606245-44606313)
chr8 (136-227)||(24069388-24069479)
chr8 (29-91)||(117266-117328)
chr8 (138-227)||(35943991-35944080)
chr8 (136-227)||(2421235-2421326)
chr8 (5-88)||(10052326-10052408)
chr8 (56-91)||(13363440-13363475)
chr8 (163-224)||(16363781-16363842)
chr8 (165-234)||(39220755-39220824)
chr8 (184-228)||(29738373-29738417)
[»] chr6 (11 HSPs)
chr6 (137-239)||(18139430-18139532)
chr6 (5-91)||(33801828-33801914)
chr6 (136-228)||(293582-293674)
chr6 (140-227)||(33801963-33802050)
chr6 (138-239)||(31738434-31738535)
chr6 (144-232)||(13507121-13507209)
chr6 (136-219)||(14328716-14328799)
chr6 (136-219)||(14421726-14421809)
chr6 (55-91)||(18139347-18139383)
chr6 (165-227)||(27440146-27440208)
chr6 (193-225)||(33807774-33807806)
[»] chr4 (27 HSPs)
chr4 (137-227)||(35787879-35787969)
chr4 (143-225)||(86888-86970)
chr4 (140-239)||(39592235-39592334)
chr4 (5-91)||(11094743-11094829)
chr4 (136-239)||(47668539-47668642)
chr4 (14-91)||(39592110-39592186)
chr4 (136-225)||(11094611-11094698)
chr4 (140-228)||(38418963-38419051)
chr4 (15-91)||(52980203-52980279)
chr4 (136-239)||(6616153-6616256)
chr4 (140-245)||(36604787-36604892)
chr4 (143-245)||(29687927-29688029)
chr4 (136-210)||(44302820-44302894)
chr4 (140-245)||(2293471-2293576)
chr4 (137-227)||(11114923-11115013)
chr4 (5-91)||(47668415-47668501)
chr4 (12-88)||(35788018-35788093)
chr4 (167-219)||(41401677-41401729)
chr4 (136-227)||(6140302-6140393)
chr4 (140-227)||(29663725-29663812)
chr4 (5-87)||(29687788-29687871)
chr4 (144-199)||(43894216-43894271)
chr4 (138-227)||(38370365-38370455)
chr4 (187-249)||(52981143-52981205)
chr4 (163-227)||(17319125-17319189)
chr4 (167-227)||(34438489-34438549)
chr4 (187-243)||(39591008-39591064)
[»] chr1 (22 HSPs)
chr1 (136-220)||(9633865-9633949)
chr1 (136-225)||(49141438-49141527)
chr1 (136-239)||(52742918-52743021)
chr1 (143-245)||(44977286-44977388)
chr1 (140-228)||(14764311-14764399)
chr1 (140-239)||(51218912-51219011)
chr1 (136-227)||(51726786-51726877)
chr1 (139-219)||(26056092-26056172)
chr1 (136-239)||(27689354-27689457)
chr1 (136-210)||(50678463-50678537)
chr1 (136-236)||(22766762-22766862)
chr1 (136-227)||(21277077-21277168)
chr1 (136-239)||(23082068-23082171)
chr1 (136-210)||(37624512-37624586)
chr1 (136-239)||(30551531-30551634)
chr1 (26-91)||(30551421-30551486)
chr1 (136-220)||(8092688-8092772)
chr1 (167-227)||(36509894-36509954)
chr1 (5-87)||(52742787-52742869)
chr1 (136-196)||(14169733-14169793)
chr1 (55-87)||(27689510-27689542)
chr1 (55-91)||(37624431-37624467)
[»] scaffold0098 (1 HSPs)
scaffold0098 (140-228)||(40990-41078)
[»] scaffold0015 (1 HSPs)
scaffold0015 (140-236)||(207744-207840)
[»] chr3 (14 HSPs)
chr3 (140-239)||(17350048-17350147)
chr3 (140-239)||(39133088-39133187)
chr3 (138-228)||(11219512-11219602)
chr3 (136-227)||(19622088-19622179)
chr3 (140-245)||(7483471-7483576)
chr3 (136-227)||(8371303-8371394)
chr3 (136-236)||(47765512-47765612)
chr3 (136-239)||(34902936-34903038)
chr3 (136-210)||(32979188-32979262)
chr3 (5-91)||(47765658-47765744)
chr3 (138-227)||(23559902-23559991)
chr3 (140-240)||(53808388-53808488)
chr3 (139-239)||(25583185-25583284)
chr3 (140-204)||(31638224-31638290)
[»] chr2 (22 HSPs)
chr2 (138-228)||(7983639-7983729)
chr2 (140-233)||(14714569-14714662)
chr2 (140-239)||(26205084-26205183)
chr2 (136-225)||(29424554-29424643)
chr2 (136-228)||(10367321-10367413)
chr2 (5-87)||(21010309-21010391)
chr2 (140-239)||(4512177-4512276)
chr2 (136-219)||(12852977-12853060)
chr2 (138-227)||(23177757-23177846)
chr2 (138-227)||(23589014-23589103)
chr2 (136-227)||(12959647-12959738)
chr2 (136-227)||(14509292-14509383)
chr2 (147-210)||(21010451-21010514)
chr2 (136-210)||(25570812-25570886)
chr2 (141-199)||(45047453-45047511)
chr2 (165-225)||(35799597-35799657)
chr2 (136-228)||(37868982-37869074)
chr2 (160-219)||(32614476-32614535)
chr2 (140-190)||(3532314-3532364)
chr2 (141-239)||(41296401-41296499)
chr2 (141-218)||(28109816-28109893)
chr2 (136-195)||(3528207-3528266)
[»] chr5 (9 HSPs)
chr5 (136-228)||(7426723-7426815)
chr5 (15-91)||(7426860-7426936)
chr5 (136-228)||(19525230-19525322)
chr5 (136-227)||(40058101-40058192)
chr5 (136-210)||(18693798-18693872)
chr5 (136-204)||(5383048-5383116)
chr5 (139-227)||(21387720-21387808)
chr5 (167-227)||(42510197-42510257)
chr5 (136-227)||(2167457-2167547)
[»] scaffold0025 (2 HSPs)
scaffold0025 (5-88)||(56509-56593)
scaffold0025 (136-227)||(56642-56733)
[»] scaffold0122 (1 HSPs)
scaffold0122 (136-222)||(16033-16119)
[»] scaffold0084 (1 HSPs)
scaffold0084 (140-210)||(13150-13220)
[»] scaffold1974 (1 HSPs)
scaffold1974 (138-227)||(572-661)
[»] scaffold1878 (1 HSPs)
scaffold1878 (138-227)||(613-702)
[»] scaffold0290 (1 HSPs)
scaffold0290 (138-227)||(9422-9511)
[»] scaffold0051 (1 HSPs)
scaffold0051 (136-210)||(39843-39917)
[»] scaffold0045 (1 HSPs)
scaffold0045 (136-225)||(77121-77212)
[»] scaffold0003 (1 HSPs)
scaffold0003 (165-227)||(47153-47215)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 14109013 - 14109118
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  |||    
T  14109013 ggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggactaaaacggtaaacggcaaaagacat--ggg 14109110  T
Q  236 accagttt 243  Q
    ||||||||    
T  14109111 accagttt 14109118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 14418970 - 14419075
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  |||    
T  14418970 ggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggactaaaacggtaaacggcaaaagacat--ggg 14419067  T
Q  236 accagttt 243  Q
    ||||||||    
T  14419068 accagttt 14419075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 14108882 - 14108968
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  14108882 gaagaaaatgaagaaaggtgagaaaaatatttagtgttggttgtttacaataaaatataatagatcctacatgatccaacaatcctc 14108968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 14418839 - 14418925
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  14418839 gaagaaaatgaagaaaggtgagaaaaatatttagtgttggttgtttacaataaaatataatagatcctacatgatccaacaatcctc 14418925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 4857347 - 4857284
Alignment:
Q  164 gttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  4857347 gttcaccttagacatttgatgttaaaaactaacggagaggactaaaacagtaaacggcagaaga 4857284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 4167623 - 4167533
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||  | || || | ||||||||| ||||||| ||||||||    
T  4167623 tctatggtggaccacctttaaacatggttcaccttagaaatttgatgttaaaaattgacagaaatgactaaaacagtaaacgacagaagac 4167533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 24494997 - 24495096
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    ||||||||||||| |||||| | ||||||| |||||||||||||||||||| |||||||||||||| |||   |  ||| | ||||||||||||||||||    
T  24494997 tatggtggaccacttttaaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaaacgaggtaacagaagaagacataagggacca 24495096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 38406184 - 38406101
Alignment:
Q  144 gtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||||  ||||||| ||||| ||||| ||||||| |||||||    
T  38406184 gtggactacctttaaatatggttcaccttagacatttgatgttaaaaattaacggaaaggaccaaaacagtaaacgtcagaaga 38406101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 35315199 - 35315267
Alignment:
Q  171 ttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||| || |||||||    
T  35315199 ttagacatttgatgttaaaaactaacagagaggactaaaacagtaaacgacagaagacttatgggacca 35315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 46458655 - 46458746
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||| |||| ||||   |||||||||||||||||| | ||||||| | |||||||||||| |||| ||||||||| ||||||    
T  46458655 ggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggaagaaga 46458746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 38406322 - 38406236
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| ||||||||||||||| ||||||||| |||| | | ||||| ||||||||| |||||||  || |||||||||||||||||    
T  38406322 gaagaagatgaagaaaggtgaggaaaatatttggtgtggatggtttacaataaaatacaatagactttaaatgatccaacaatcctc 38406236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 4167746 - 4167670
Alignment:
Q  15 aagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||||||||||||||||||  |||| ||| ||||| ||||||||| || ||||||||||| ||||||||| ||||    
T  4167746 aagaaaggtgagaaaaatattaggtgtcggtggtttacaataaaatacaacagaccctacatcatccaacaaacctc 4167670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 40930708 - 40930645
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagac 69  Q
    |||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||    
T  40930708 gaagaagatgaagaaaggtgagaaaaata-taagtgttggtggtttataataaaatacaatagac 40930645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 40930588 - 40930510
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaac 218  Q
    ||||| ||| |||||| || || ||| ||||||||| |||||||||||||| ||||  |||||||||||||||||||||    
T  40930588 tatgggggatcaccttgaatcatggtccaccttagatatttgatgttaaaaactaatagagaggactaaaacggtaaac 40930510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 26406297 - 26406208
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||||  |||   |||||||||||||||||| | |||||||  ||||||||| ||| |||| | ||||||||||||||    
T  26406297 tctatggtggaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggagatgaccaaaatgttaaacggcagaaga 26406208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 13286965 - 13287039
Alignment:
Q  165 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||| ||||||||||| | ||||||| |||||| ||||||| ||||  |||||| ||| ||||||||||||||||    
T  13286965 ttcatcttagacatttaaggttaaaaactaacgaagaggaccaaaatagtaaacagcataagacataagggacca 13287039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 14107955 - 14107903
Alignment:
Q  187 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||| |||||||||||||| |||||||| |||| ||||||| |||||||||||    
T  14107955 aaaaactaacggagaggaccaaaacggtgaacgacagaagatataagggacca 14107903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 14417912 - 14417860
Alignment:
Q  187 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||| |||||||||||||| |||||||| |||| ||||||| |||||||||||    
T  14417912 aaaaactaacggagaggaccaaaacggtgaacgacagaagatataagggacca 14417860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 18801472 - 18801434
Alignment:
Q  53 aataaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  18801472 aataaaatacaatagactctacatgatccaacaatcctc 18801434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 19848695 - 19848731
Alignment:
Q  55 taaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19848695 taaaatacaatagactctacatgatccaacaatcctc 19848731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 44103242 - 44103341
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||  | |||||| |||||||||||| |||||    
T  44103242 tatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagaggaaacggaagaagacataagagacca 44103341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 21961993 - 21961897
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggga 236  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||  |  ||||| |||||||||||||||    
T  21961993 tatggtggaccacctttaaacatggttcacctaagacatttgatgttaaaaactaacggagaggaccaaaagagataacggaagaagacataaggga 21961897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 117222 - 117131
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||||||| |||||  |||||| |||||||    
T  117222 ggtctatggtggaccacctttaaacatgactcaccttagacatttgatgttaaaaactaacggagaggaccaaaacaataaacgacagaaga 117131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 39546619 - 39546705
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggca 222  Q
    |||| ||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||||||||||||||    
T  39546619 ggtccatggtggaccacctttaaacatggttcatcttaaacatttgatgttaaaaactaacggagatgaccaaaacggtaaacggca 39546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 13366992 - 13367105
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | ||||||| |||||||||||||| ||||  |||||||||||||||  || |||    
T  13366992 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggagaggaccaaaatagtaaacggcagaagatttatggg 13367091  T
Q  236 accagtttaaaaca 249  Q
    ||||  ||||||||    
T  13367092 accaaattaaaaca 13367105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 7486251 - 7486160
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||| || |||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||  |||||| ||| ||||    
T  7486251 ggtctatggtggacaacatttaaacatggttcactttagacatttgatgttaaaaactaacggagaggaccaaaatagtaaacagcaaaaga 7486160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 13513590 - 13513491
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    ||||||||||||| |||||| | |||||| |||| ||||||||||||||||||||||||||||||| ||||  |  ||| | ||||||||||||||||||    
T  13513590 tatggtggaccacttttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggaccaaaagaggtaacagaagaagacataagggacca 13513491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 13603123 - 13603024
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    ||||||||||||| |||||| | |||||| |||| ||||||||||||||||||||||||||||||| ||||  |  ||| | ||||||||||||||||||    
T  13603123 tatggtggaccacttttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggaccaaaagaggtaacagaagaagacataagggacca 13603024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 39325787 - 39325888
Alignment:
Q  147 gaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaa 246  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||| | |||| ||||||||  |  ||||| |||| ||||||||||||| ||||||    
T  39325787 gaccacctttaaacatagttcaccttagacatttgatgttaaaaactagcagagatgactaaaagaggtaacggaagaaaacataagggaccaatttaaa 39325886  T
Q  247 ac 248  Q
    ||    
T  39325887 ac 39325888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 10052274 - 10052175
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||||||||||| | |||||| ||||||||||| ||||||||| |||| ||||| ||| ||||  |  ||||||||| ||||||||||||||    
T  10052274 tatggtggaccacctttaaatatggttcatcttagacatttaatgttaaaaactaaaggagatgaccaaaagaggtaacggcagatgacataagggacca 10052175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 21670234 - 21670135
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    ||||||||||||| ||| || | ||||||||||||| |||||||||||||| |||||||||| ||| ||||  |  ||||| ||||||||||||||||||    
T  21670234 tatggtggaccactttttaatatggttcaccttagatatttgatgttaaaaactaacggagaagaccaaaagaggtaacggaagaagacataagggacca 21670135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 41522542 - 41522613
Alignment:
Q  15 aagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaa 86  Q
    |||||||||||||||||||||  |||||||| ||||| ||||||||| |||||||||||||| |||||||||    
T  41522542 aagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaccctacatcatccaacaa 41522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 41522632 - 41522722
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    |||||| |||||||| |||||||| |||||| |||| | ||||||||||||||  | ||||| ||||||||||| ||||||||||||||||    
T  41522632 tctatgctggaccacttttaaacatggttcatcttaaatatttgatgttaaaaattgacggaaaggactaaaacagtaaacggcagaagac 41522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 12281726 - 12281805
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    |||||||||||||||| || || ||| ||| ||||| |||||||||||||| |||||||||||||  |||||||||||||    
T  12281726 tatggtggaccaccttgaatcatggtccacattagatatttgatgttaaaaactaacggagaggatcaaaacggtaaacg 12281805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 13363520 - 13363623
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||| |||||| |||||||||||| | ||||||| ||||||||||| |||||||| |||||||||||||| ||||  |  |||  ||||| |||||||||    
T  13363520 ggtccatggtgcaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaaccacagaaaacataaggg 13363619  T
Q  236 acca 239  Q
    ||||    
T  13363620 acca 13363623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 19913665 - 19913563
Alignment:
Q  137 gtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggga 236  Q
    ||||||||||||||| || ||||   ||||||||||||| |||| | ||||||| |||||||||||||| |||| | ||||| ||||||||| || ||||    
T  19913665 gtctatggtggaccatctataaagttggttcaccttagaaatttaaggttaaaaactaacggagaggaccaaaatgataaaccgcagaagacttatggga 19913566  T
Q  237 cca 239  Q
    |||    
T  19913565 cca 19913563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 21267302 - 21267237
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggac 205  Q
    |||||||||||||||| || || ||| ||||||||| |||||||||||||| ||||||||||||||    
T  21267302 tatggtggaccaccttgaatcatggtccaccttagatatttgatgttaaaaactaacggagaggac 21267237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 37276185 - 37276254
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggac 205  Q
    ||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||| ||||| ||||||||    
T  37276185 ggtctatagtgaaccacctttaaatatggttcaccttagacttttgatgttaaaaactaacagagaggac 37276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 36070352 - 36070261
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | || |||  ||||||| |||||| ||||  |||||||||||||||    
T  36070352 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaagactaacggggaggaccaaaatagtaaacggcagaaga 36070261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 36756234 - 36756155
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    ||||||| |||||||||||| | | ||||||||||| |||||||||||||| |||||||||| ||| ||||  |||||||    
T  36756234 tatggtgaaccacctttaaatatgattcaccttagaaatttgatgttaaaaactaacggagatgaccaaaatagtaaacg 36756155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 36938851 - 36938764
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||| |||||||||||| | ||||||| ||||| ||||||||||||||  |||| |||| ||| ||||  |||||||||||||||    
T  36938851 tatggtgaaccacctttaaatatggttcactttagatatttgatgttaaaaattaacagagaagaccaaaatagtaaacggcagaaga 36938764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 7486381 - 7486296
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| |||||||| |||||||||||||||  |||||||| ||||| ||||||||| |||||| | || |||||| ||||||||||    
T  7486381 gaagaagatgaagaa-ggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagatcttatatgatctaacaatcctc 7486296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 44606313 - 44606245
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagagga 204  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | ||||||| |||| ||||||||    
T  44606313 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaatggagagga 44606245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 24069388 - 24069479
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||| |||    ||| ||||||||||||||  |||||||| |  ||||| ||||| |||| ||||||||||||||||    
T  24069388 ggtctatggtggaccacctataatgttggtccaccttagacatttagtgttaaaaacagacggaaaggaccaaaatggtaaacggcagaaga 24069479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 117328 - 117266
Alignment:
Q  29 aaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||| | ||||||| ||||| ||||||||| |||||| |||| |||||||||||||||||    
T  117328 aaatattaaatgttggtggtttacaataaaatacaatagatcctatatgatccaacaatcctc 117266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 35944080 - 35943991
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||| ||||| ||||   |||||||||||||||||| | ||||||| |||||||||| ||| ||||  |||||| ||| ||||    
T  35944080 tctatggtggatcacctataaagttggttcaccttagacatttaaagttaaaaactaacggagatgaccaaaatagtaaactgcataaga 35943991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 2421235 - 2421326
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||| ||||||| || ||||   |||||||||||||||||| | ||||||| |||||  ||||||| ||||   ||||||||||||||    
T  2421235 ggtctatgatggaccatctataaagttggttcaccttagacatttaaggttaaaaactaacaaagaggaccaaaataataaacggcagaaga 2421326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 10052408 - 10052326
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatc 88  Q
    |||||| ||||||||| |||||||||| |||  ||| | || ||| | | ||||||| ||||||||||||||||||||||||||    
T  10052408 gaagaagatgaagaaaagtgagaaaaa-attaggtggtagtggttcacagtaaaatacaatagaccctacatgatccaacaatc 10052326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 13363440 - 13363475
Alignment:
Q  56 aaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| |||||||||||||||||||||||||||||    
T  13363440 aaaatacaatagaccctacatgatccaacaatcctc 13363475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 16363781 - 16363842
Alignment:
Q  163 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcaga 224  Q
    |||||||||||||||||| | ||||| | |||||||||||||| ||||  |||||| |||||    
T  16363781 ggttcaccttagacatttaaagttaataactaacggagaggaccaaaatagtaaacagcaga 16363842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 39220824 - 39220755
Alignment:
Q  165 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagg 234  Q
    |||||||||||||||| | ||||||| ||||| ||||  || ||||  |||||||||||||||| |||||    
T  39220824 ttcaccttagacatttaaggttaaaaactaacagagataacgaaaatagtaaacggcagaagacttaagg 39220755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 29738417 - 29738373
Alignment:
Q  184 gttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||| | |||||||||||| |||| |||||||||||||||||    
T  29738417 gttaaaaacaaacggagaggaccaaaaaggtaaacggcagaagac 29738373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 18139430 - 18139532
Alignment:
Q  137 gtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggga 236  Q
    |||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||  |||||||||||||| ||||||||    
T  18139430 gtctatggtggatcatctttaaacatggttcaccttagacatttgatgttaaaaactaatggagaggaccaaaacaataaacggcagaagatataaggga 18139529  T
Q  237 cca 239  Q
    |||    
T  18139530 cca 18139532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 33801828 - 33801914
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| |||||||||||||| ||||||||  ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  33801828 gaagaagatgaagaaaggtgaaaaaaatatcaagtgttggtggtttataataaaaaacaatagaccctacatgatccaacaatcctc 33801914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 293582 - 293674
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | |||||||   |||||||||||| |||| |||||||| ||||||||    
T  293582 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaataaacggagaggaccaaaatggtaaacgacagaagac 293674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 33801963 - 33802050
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||| || || |||  |||||||| |||||||||||||| |||||||||||||| || |||||||||  |||||||    
T  33801963 tatggtggaccaccttgaatcatggtctaccttagatatttgatgttaaaaactaacggagaggaccaatacggtaaactacagaaga 33802050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 31738535 - 31738434
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggac 237  Q
    |||||||||||||  || ||||   ||||||| |||||||||| | ||||||| |||||||||||||| |||| ||||||| ||||||||| || |||||    
T  31738535 tctatggtggaccgtctataaagttggttcacattagacatttaaggttaaaaactaacggagaggaccaaaatggtaaaccgcagaagacttatgggac 31738436  T
Q  238 ca 239  Q
    ||    
T  31738435 ca 31738434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 13507121 - 13507209
Alignment:
Q  144 gtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataa 232  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||| ||||| |||| ||||| ||  |  |||| ||||||||||||    
T  13507121 gtggaccacctttaaatatggttcaccttaaacatttgatgttaaaaactaacagagatgactagaagagataacgacagaagacataa 13507209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 14328716 - 14328799
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | |||||||  ||||||||||||| ||||  |||||||    
T  14328716 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaaatagtaaacg 14328799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 14421726 - 14421809
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | |||||||  ||||||||||||| ||||  |||||||    
T  14421726 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaaatagtaaacg 14421809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 18139347 - 18139383
Alignment:
Q  55 taaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||| |||||||||||||||||||||||||||||    
T  18139347 taaaatacaatagaccctacatgatccaacaatcctc 18139383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 27440146 - 27440208
Alignment:
Q  165 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||| | |||||||  ||||||||||||| ||||  |||||||| ||||||    
T  27440146 ttcaccttagacatttaaagttaaaaattaacggagaggaccaaaatagtaaacggaagaaga 27440208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 33807806 - 33807774
Alignment:
Q  193 taacggagaggactaaaacggtaaacggcagaa 225  Q
    ||||||||||||| |||||||||||||||||||    
T  33807806 taacggagaggaccaaaacggtaaacggcagaa 33807774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 35787969 - 35787879
Alignment:
Q  137 gtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  35787969 gtctatggtggaccacctttaaacatgatttaccttagacatttgatgttaaaaactaacggagaggaccaaaacggtaaacgacagaaga 35787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 86970 - 86888
Alignment:
Q  143 ggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 225  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||    
T  86970 ggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaagaccaaaacagtaaacggcagaa 86888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 39592235 - 39592334
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||||||  |||||||||| || ||||| ||||||| |||||||||||| ||||||    
T  39592235 tatgatggaccacctttaaacatggctcaccttagacatttgatgttaaaaattaacggagagaaccaaaacagtaaacgacagaagacataatggacca 39592334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 11094829 - 11094743
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  11094829 gaagaagatgaagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaccttacatgatccaacaatcctc 11094743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 47668539 - 47668642
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||||||||||||||| |||||| || |||| |||||||| |||||||||||||| ||||| |||||||| |||||  ||||||||||| || |||||||    
T  47668539 ggtctatggtggaccatctttaaccatggtttaccttagatatttgatgttaaaaactaacagagaggaccaaaacaataaacggcagatgatataaggg 47668638  T
Q  236 acca 239  Q
    ||||    
T  47668639 acca 47668642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 39592110 - 39592186
Alignment:
Q  14 gaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  39592110 gaagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatataataga-cctacatgatccaacaatcctc 39592186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 11094698 - 11094611
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 225  Q
    ||||||||||| ||||| |||||||| |||  ||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||    
T  11094698 ggtctatggtgaaccacatttaaacatggt--accttagacatttgatgttaaaaactaacgaagaggaccaaaacagtaaacggcagaa 11094611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 38418963 - 38419051
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||||||||||| |||| | |||||| |||| || ||| ||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  38418963 tatggtggaccacctataaatatggttcatcttaaacgtttaatgttaaaaactaacggagatgactaaaacagtaaacggcagaagac 38419051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 52980279 - 52980203
Alignment:
Q  15 aagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||||||||||||||||||  |||||||| ||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  52980279 aagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagactctacataatccaacaatcctc 52980203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 6616153 - 6616256
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    ||||||| |||||| | |||||| ||  ||||||||| ||||||||||||||||| |||| ||||||||| |||||  |||||| ||||| | |||||||    
T  6616153 ggtctatagtggactatctttaatcattgttcacctttgacatttgatgttaaaaactaaaggagaggaccaaaacaataaacgacagaatatataaggg 6616252  T
Q  236 acca 239  Q
    ||||    
T  6616253 acca 6616256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 36604787 - 36604892
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||| |||| ||| || | |||||| |||||| ||||||| |||||| |||||||||||||| ||||  |  ||||| ||||||||||||||||||    
T  36604787 tatggtgggccactttttaatatggttcatcttagatatttgatattaaaaactaacggagaggaccaaaagaggtaacggaagaagacataagggacca 36604886  T
Q  240 gtttaa 245  Q
     |||||    
T  36604887 atttaa 36604892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 29687927 - 29688029
Alignment:
Q  143 ggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtt 242  Q
    ||||||||||||||||| | ||||| || ||||||||||||||||||| |||| ||||| ||| ||||  |  |||| || |||||||||||||  ||||    
T  29687927 ggtggaccacctttaaatatggttcgccgtagacatttgatgttaaaaactaaaggagatgaccaaaagaggtaacgacaaaagacataagggatgagtt 29688026  T
Q  243 taa 245  Q
    |||    
T  29688027 taa 29688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 44302894 - 44302820
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    ||||||||||| |||||||||||| |  ||||||||||| | ||| ||||||||| |||||||||||||| ||||    
T  44302894 ggtctatggtgaaccacctttaaatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaa 44302820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 2293471 - 2293576
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||| ||||||| | | ||||| | ||||||||||| |||||| |||||||||||||| || |  |   |||| ||||||||||||||||||    
T  2293471 tatggtggaccatctttaaatatgattcacttcagacatttgattttaaaaactaacggagaggaccaatagagattacggaagaagacataagggacca 2293570  T
Q  240 gtttaa 245  Q
     |||||    
T  2293571 atttaa 2293576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 11114923 - 11115013
Alignment:
Q  137 gtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||| ||||||||  |||   |||||| ||||||||||| | ||||||| |||||||||||| | |||| |||||||| |||||||    
T  11114923 gtctatggtagaccacctacaaagttggttcagcttagacatttaaggttaaaaactaacggagaggtccaaaatggtaaacgacagaaga 11115013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 47668415 - 47668501
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| ||||||||| |||| || |||||| | |||| || ||| | | ||||||| |||||||||||||||||| ||||||||||    
T  47668415 gaagaagatgaagaaaagtgaaaagaatattaaatgttagtggttcacactaaaatacaatagaccctacatgatcgaacaatcctc 47668501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 35788093 - 35788018
Alignment:
Q  12 atgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatc 88  Q
    ||||||| |||| |||||||||||  ||||||||  |||| ||||||||  |||||||||| |||||||||||||||    
T  35788093 atgaagataggt-agaaaaatattaggtgttggtgatttacaataaaatgcaatagaccctgcatgatccaacaatc 35788018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 41401677 - 41401729
Alignment:
Q  167 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    ||||||||||||||||||||||||  ||| ||||||||  |||||||||||||    
T  41401677 caccttagacatttgatgttaaaaattaatggagaggatcaaaacggtaaacg 41401729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 6140302 - 6140393
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||| |||| ||||   ||||||||||||| |||| | ||||||| |||||||| | ||| ||||  ||||||| |||||||    
T  6140302 ggtctatggtggactacctataaagttggttcaccttagatatttaaggttaaaaactaacggaaatgaccaaaatagtaaacgacagaaga 6140393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 29663812 - 29663725
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||| |||    |||||||||||||||||| |||||||||   |||||| | ||  |||| ||||||||||||||||    
T  29663812 tatggtggaccacctataatgttggttcaccttagacatttaatgttaaaattaaacggaaaagatcaaaatggtaaacggcagaaga 29663725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 29687788 - 29687871
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttag-tgttggttgtttataataaaatataatagaccctacatgatccaacaat 87  Q
    |||||| ||||||||| |||||||||| | |||| || | || ||| | ||||||||| |||||||| ||||||||||||||||    
T  29687788 gaagaagatgaagaaaagtgagaaaaaaaattaggtggtagtggttcacaataaaatacaatagaccttacatgatccaacaat 29687871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 43894271 - 43894216
Alignment:
Q  144 gtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacgga 199  Q
    |||||||| ||||||| | ||||||||| |||||||||||||||||| | ||||||    
T  43894271 gtggaccatctttaaatatggttcacctcagacatttgatgttaaaaaccaacgga 43894216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 38370455 - 38370365
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagaca-tttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||||  |||   |||||||||||| || ||| | ||||||| |||||||||| ||| |||| |||||||| |||||||    
T  38370455 tctatggtggaccacctacaaagttggttcaccttagtcattttaaggttaaaaactaacggagatgaccaaaatggtaaacgacagaaga 38370365  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 52981143 - 52981205
Alignment:
Q  187 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 249  Q
    |||| ||||| | |||||| ||||| ||||||  ||||||||||||||||||||||| |||||    
T  52981143 aaaaactaactgcgaggaccaaaacagtaaacaacagaagacataagggaccagtttgaaaca 52981205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 17319189 - 17319125
Alignment:
Q  163 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||||| | ||||||| ||||||| || ||| ||||  ||||||| |||||||    
T  17319189 ggttcaccttagacatttaaggttaaaaactaacggtgaagaccaaaatagtaaacgccagaaga 17319125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 34438549 - 34438489
Alignment:
Q  167 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| ||||||||||| ||||||| ||||| ||||| || ||||  |||||||||||||||    
T  34438549 caccatagacatttgaggttaaaaactaacagagagaaccaaaatagtaaacggcagaaga 34438489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 39591064 - 39591008
Alignment:
Q  187 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagttt 243  Q
    |||| ||||| | |||||||||||| ||||||| |||| | ||||||||||||||||    
T  39591064 aaaaactaactgcgaggactaaaacagtaaacgacagatggcataagggaccagttt 39591008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 9633949 - 9633865
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacgg 220  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||||    
T  9633949 ggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggatcaaaactgtaaacgg 9633865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 49141438 - 49141527
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 225  Q
    ||||||||||||| || ||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  49141438 ggtctatggtggaacaactttaaatatggttcaccttagacatttgatgttaaaaactaacggagatgactaaaatggtaaacggcagaa 49141527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 52742918 - 52743021
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| | ||| ||||||| || || || ||||||    
T  52742918 ggtctatggtgtaccacctttaaacatggttcaccttaaacatttgatgttaaaaactaacggagaggaccataacagtaaacgacataaaacctaaggg 52743017  T
Q  236 acca 239  Q
    ||||    
T  52743018 acca 52743021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 44977388 - 44977286
Alignment:
Q  143 ggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtt 242  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||| ||| |||   |  |||||||||||||||||||||||||||    
T  44977388 ggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaagacataagggaccagtt 44977289  T
Q  243 taa 245  Q
    |||    
T  44977288 taa 44977286  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 14764399 - 14764311
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    |||||||||||||||||||| | ||||||||||| |||||| ||||||||| ||||| |||| ||||||||| ||||||| ||||||||    
T  14764399 tatggtggaccacctttaaataaggttcaccttaaacatttaatgttaaaaactaacagagatgactaaaacagtaaacgacagaagac 14764311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 51218912 - 51219011
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||| ||||||| | ||||||| |||||||||||||||||||| |||||||||||||| ||    || ||||| ||||||||||||||||||    
T  51218912 tatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaattgagttaacggaagaagacataagggacca 51219011  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 51726786 - 51726877
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | ||||||| ||||||| |||||||||||  ||||||| |||||||    
T  51726786 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggtgaggactaaaatagtaaacgacagaaga 51726877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 26056092 - 26056172
Alignment:
Q  139 ctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    |||||||| |||||||||||| | ||||||| |||||| ||||||||||||| |||||||||||||| ||||  |||||||    
T  26056092 ctatggtgaaccacctttaaatatggttcactttagacttttgatgttaaaatctaacggagaggaccaaaatagtaaacg 26056172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 27689457 - 27689354
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||| ||| ||||||||||||||| | ||||||| ||||||||||| |||||||| |||||||||||||| ||||  |  |||| ||||| ||||||| |    
T  27689457 ggtccatgatggaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaacgacagaaaacataagag 27689358  T
Q  236 acca 239  Q
    ||||    
T  27689357 acca 27689354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 50678537 - 50678463
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    ||||||||||| |||||||||||| | |||||||||||||  ||||||||||||| ||||| |||||||| ||||    
T  50678537 ggtctatggtgaaccacctttaaatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaa 50678463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 22766762 - 22766862
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||| ||||||||||||||||||| | ||||||| ||||| ||||| |||||||| |||||||| ||||| ||||  |  |||| ||||| |||||||||    
T  22766762 ggtccatggtggaccacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaaaagaggcaacgacagaaaacataaggg 22766861  T
Q  236 a 236  Q
    |    
T  22766862 a 22766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 21277168 - 21277077
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| | || |||| |||| ||||||||  ||||  |||||||||||||||    
T  21277168 ggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaaaactaatggagaggatcaaaatagtaaacggcagaaga 21277077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 23082068 - 23082171
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||| ||||||||||||||||||| | ||||||| ||||| ||||| |||||||| |||||||| ||||| ||||  |  |||| ||||| | |||||||    
T  23082068 ggtccatggtggaccacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaaaagaggcaacgacagaaaatataaggg 23082167  T
Q  236 acca 239  Q
    ||||    
T  23082168 acca 23082171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 37624512 - 37624586
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    |||| |||||| || |||||| || | ||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  37624512 ggtccatggtgcacaaccttttaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaaaa 37624586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 30551531 - 30551634
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||| |||||| ||||||||| || | ||||||| |||||||||||||| ||||| |||||||||| ||| ||||  |  ||||  |||| |||||||||    
T  30551531 ggtccatggtgcaccaccttttaatatggttcactttagacatttgatgctaaaaactaacggagatgaccaaaagaggtaacgatagaaaacataaggg 30551630  T
Q  236 acca 239  Q
    ||||    
T  30551631 acca 30551634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 30551421 - 30551486
Alignment:
Q  26 gaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||||||  ||||| || ||| | | ||||||| |||||||||||||||||||||||||||||    
T  30551421 gaaaaatattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaatcctc 30551486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 8092772 - 8092688
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacgg 220  Q
    ||||||||||||||||||| ||||   ||||||||||||| |||| | ||||||  |||||||| ||||| ||| | ||||||||    
T  8092772 ggtctatggtggaccacctataaagttggttcaccttagatatttaaggttaaatactaacggaaaggaccaaatcagtaaacgg 8092688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 36509954 - 36509894
Alignment:
Q  167 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| ||||||||||| ||||||| ||||||||||| || ||||  |||||||||||||||    
T  36509954 caccatagacatttgaggttaaaaactaacggagagaaccaaaatagtaaacggcagaaga 36509894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 52742787 - 52742869
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaat 87  Q
    |||||| ||||||||||||||||||||||||  ||||  || ||||| | ||||||| |||||| |||   ||||||||||||    
T  52742787 gaagaagatgaagaaaggtgagaaaaatattaggtgtcagtggtttacagtaaaatacaatagatcctttgtgatccaacaat 52742869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 14169793 - 14169733
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaac 196  Q
    |||||||||||| |||||| ||||   |||||||||||||||||| | ||||||| |||||    
T  14169793 ggtctatggtgggccacctataaagttggttcaccttagacatttaaggttaaaaactaac 14169733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 27689542 - 27689510
Alignment:
Q  55 taaaatataatagaccctacatgatccaacaat 87  Q
    ||||||| |||||||||||||||||||||||||    
T  27689542 taaaatacaatagaccctacatgatccaacaat 27689510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 37624431 - 37624467
Alignment:
Q  55 taaaatataatagaccctacatgatccaacaatcctc 91  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  37624431 taaaatacaatagaccctacatgattcaacaatcctc 37624467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 41078 - 40990
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||    
T  41078 tatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagagaactaaaacagtaaacgacagaagac 40990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 207744 - 207840
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggga 236  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||  |  ||||| |||||||||||||||    
T  207744 tatggtggaccacctttaaacatggttcacctaagacatttgatgttaaaaactaacggagaggaccaaaagagataacggaagaagacataaggga 207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 17350048 - 17350147
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||  |  ||| | ||||||||||||||||||    
T  17350048 tatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagaggtaacaggagaagacataagggacca 17350147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 39133187 - 39133088
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||| ||||  |  ||||  ||||||||||||||||||    
T  39133187 tatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagaggaccaaaagaggtaacgagagaagacataagggacca 39133088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 11219602 - 11219512
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||||| |||||||||||| | |||||||||||||  ||||||||||||| |||||||||| ||| ||||  ||||||||||||||||    
T  11219602 tctatggtgaaccacctttaaatatggttcaccttagaattttgatgttaaaatctaacggagatgaccaaaatagtaaacggcagaagac 11219512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 19622179 - 19622088
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||| |||||||||||||||||||  |||||||||| |||||||||||| ||| |||||||||||||| ||| | |||||  ||||||||    
T  19622179 ggtctacggtggaccacctttaaacatagttcaccttaaacatttgatgttgaaaactaacggagaggaccaaaccagtaaatagcagaaga 19622088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 7483471 - 7483576
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||| |||| ||| || | ||||||||||||| |||||||||||||| |||||||||| ||| ||||  |  ||||| ||||||||||||||||||    
T  7483471 tatggtgggccactttttaatatggttcaccttagatatttgatgttaaaaactaacggagatgaccaaaagaggtaacggaagaagacataagggacca 7483570  T
Q  240 gtttaa 245  Q
     |||||    
T  7483571 atttaa 7483576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 8371394 - 8371303
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| |||||||||||||| |||  ||||||| | ||||| |||||||||||||| |||||||||||||| ||||  |||||| ||||||||    
T  8371394 ggtccatggtggaccacctctaagtacggttcgctttagatatttgatgttaaaaactaacggagaggaccaaaatagtaaactgcagaaga 8371303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 47765612 - 47765512
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||||||||||||||| ||||||  | ||||||||| ||| |||||||||||||| |||||||||| ||| |||||  |||||  | ||||| |||||||    
T  47765612 ggtctatggtggaccatctttaacaatggttcacctaagatatttgatgttaaaaactaacggagatgaccaaaacaataaacaacggaagatataaggg 47765513  T
Q  236 a 236  Q
    |    
T  47765512 a 47765512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 34902936 - 34903038
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataaggg 235  Q
    |||| |||||| |||||||||||| | ||||||| ||||||||||| |||||||| |||||||||| ||| ||||  || |||| ||||| ||||||| |    
T  34902936 ggtccatggtgcaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagatgaccaaaagagt-aacgacagaaaacataagag 34903034  T
Q  236 acca 239  Q
    ||||    
T  34903035 acca 34903038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 32979262 - 32979188
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    ||||||||||| |||||||||||| |  ||||||||||| | ||| ||||||||| |||||||||||||| ||||    
T  32979262 ggtctatggtgaaccacctttaaatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaa 32979188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 47765744 - 47765658
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||| ||||||||| |||| || |||||| |||||| || ||| |   ||||||| |||||||||||||||||||||||||||||    
T  47765744 gaagaagatgaagaaaagtgaaaagaatattaagtgttagtggttcacgctaaaatacaatagaccctacatgatccaacaatcctc 47765658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 23559991 - 23559902
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||| ||||   |||||| |||||||| || | ||||||| |||||||||||||| ||||  ||||||| |||||||    
T  23559991 tctatggtggaccacctataaagttggttcatcttagacaattaaggttaaaaactaacggagaggaccaaaatagtaaacgacagaaga 23559902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 53808488 - 53808388
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||||||||||||||| | | | ||||||||||| |||||||||||||| |||| ||||| ||| ||||  ||||||| || ||||  || |||||||    
T  53808488 tatggtggaccacctttagatatgattcaccttagaaatttgatgttaaaaactaatggagatgaccaaaatagtaaacgacataagatttatgggacca 53808389  T
Q  240 g 240  Q
    |    
T  53808388 g 53808388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 25583284 - 25583185
Alignment:
Q  139 ctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacc 238  Q
    |||||||||| |||||||||  |  |||| |||||||||||| | |||||||  |||| |||||||| ||||  |||||||||||||||| || ||||||    
T  25583284 ctatggtggagcacctttaat-atagttcgccttagacatttaaggttaaaaattaacagagaggaccaaaatagtaaacggcagaagacttatgggacc 25583186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 31638290 - 31638224
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttag--acatttgatgttaaaagctaacggagagga 204  Q
    |||||| ||||||||||||| | ||||||||||||  | |||||||||||||| ||| |||||||||    
T  31638290 tatggtagaccacctttaaatatggttcaccttagatatatttgatgttaaaaactagcggagagga 31638224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 7983639 - 7983729
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||  | ||| | ||||||||||| |||||||| |||||||    
T  7983639 tctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaattgacgaaaaggactaaaacagtaaacggtagaagac 7983729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 14714662 - 14714569
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataag 233  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||  |  ||||| ||||||||||||    
T  14714662 tatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagtggtaacggaagaagacataag 14714569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 26205183 - 26205084
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    ||||||||||||| |||||  | |||||||||||||||||||||||||||| |||||||||||||| |||   |  ||||| ||||||||||||||||||    
T  26205183 tatggtggaccacttttaagtatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaacgaggtaacggaagaagacataagggacca 26205084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 29424554 - 29424643
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 225  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||||||||  | ||||| |||||||| |||||  ||||||||||||    
T  29424554 ggtctatgatggaccacctttaaacatggttcatcttagacatttgatgttagtaactaacagagaggaccaaaacaataaacggcagaa 29424643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 10367413 - 10367321
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||| ||||||||||| ||||   |||||||||||||||||| | ||||||| | |||||||| |||||||| |||||||||||||||||    
T  10367413 ggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaaaacaaacggagacgactaaaaaggtaaacggcagaagac 10367321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 21010309 - 21010391
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaat 87  Q
    |||||| ||||||||| ||||||||||||||  ||||| || ||| ||||||||||| |||||||||||| ||||||||||||    
T  21010309 gaagaagatgaagaaaagtgagaaaaatattaggtgttagtggttcataataaaatacaatagaccctacctgatccaacaat 21010391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 4512276 - 4512177
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    ||||||||||||| ||| || | ||||||||||||| |||||||||||||| |||| ||||||||| ||||  |  ||||| |||||||| |||||||||    
T  4512276 tatggtggaccactttttaatatggttcaccttagatatttgatgttaaaaactaatggagaggaccaaaagaggtaacggaagaagacacaagggacca 4512177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 12853060 - 12852977
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    ||||||||||| |||||||||||| | |||||||||||||  ||||||||||||| |||||||||| ||| ||||  |||||||    
T  12853060 ggtctatggtgaaccacctttaaatatggttcaccttagatttttgatgttaaaatctaacggagatgaccaaaatagtaaacg 12852977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 23177846 - 23177757
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| |||| |||| ||||||| | |||||| ||||||  ||| ||||||||| |||||||||||||| |||| ||||||||||||||||    
T  23177846 tctacggtgaaccatctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaaaatggtaaacggcagaaga 23177757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 23589103 - 23589014
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| |||| |||| ||||||| | |||||| ||||||  ||| ||||||||| |||||||||||||| |||| ||||||||||||||||    
T  23589103 tctacggtgaaccatctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaaaatggtaaacggcagaaga 23589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 12959647 - 12959738
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||| ||||||||||| ||||   |||||||||||||||||| | ||||||  | |||||||||||  |||| ||||||||||||||||    
T  12959647 ggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaagacaaacggagaggatcaaaaaggtaaacggcagaaga 12959738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 14509383 - 14509292
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||||||||||||||||| ||||   |||| ||||||||||||| | |||||||  ||||||||||||| ||||  ||||||| |||||||    
T  14509383 ggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaaaattaacggagaggaccaaaatagtaaacgacagaaga 14509292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 21010451 - 21010514
Alignment:
Q  147 gaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    ||||||||||||| ||||||||| |||||||||||||||||| | ||||| |||||||| ||||    
T  21010451 gaccacctttaaatacggttcacattagacatttgatgttaacaactaacagagaggaccaaaa 21010514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 25570812 - 25570886
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    ||||||||||||||||||| ||||   |||||||||||||||||| |  |||||| |||||||| ||||||||||    
T  25570812 ggtctatggtggaccacctataaagttggttcaccttagacatttaagtttaaaaactaacggaaaggactaaaa 25570886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 45047511 - 45047453
Alignment:
Q  141 atggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacgga 199  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||  |||||||    
T  45047511 atggtggaccacctttaaatatggttcaccttagacatttgatattaaaaattaacgga 45047453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 35799657 - 35799597
Alignment:
Q  165 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 225  Q
    |||||||||||||||| | |||||||||||||||||||||| |||  ||||||||| ||||    
T  35799657 ttcaccttagacatttaaggttaaaagctaacggagaggaccaaagaggtaaacggaagaa 35799597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 37868982 - 37869074
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||| ||||||||||| ||||   || ||||||||||||||| | ||||||| | |||||||| ||| |||| |||||||| ||||||||    
T  37868982 ggtctattgtggaccacctataaagttggctcaccttagacatttaaggttaaaaacaaacggagaagaccaaaaaggtaaacgacagaagac 37869074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 32614535 - 32614476
Alignment:
Q  160 cacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 219  Q
    ||||||||||||||||||| | | ||||||| | ||||||||||||||||| ||||||||    
T  32614535 cacggttcaccttagacatataaggttaaaaacaaacggagaggactaaaatggtaaacg 32614476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 3532364 - 3532314
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaa 190  Q
    |||||||||||||||||||| | ||||||||||| |||||| |||||||||    
T  3532364 tatggtggaccacctttaaatatggttcaccttaaacatttaatgttaaaa 3532314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 41296401 - 41296499
Alignment:
Q  141 atggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 239  Q
    |||||| ||||||||| || | | ||||| ||||||||||| |||||||| |||||||||||||| ||||  |  |||| || || |||||||||||||    
T  41296401 atggtgcaccaccttttaatatgattcactttagacatttggtgttaaaaactaacggagaggaccaaaagagataacgacaaaaaacataagggacca 41296499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 28109816 - 28109893
Alignment:
Q  141 atggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaac 218  Q
    ||||||||||||||  |||   |||||||||||||||||| | |||||||  ||||||||||||| |||| |||||||    
T  28109816 atggtggaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggagaggaccaaaatggtaaac 28109893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 3528207 - 3528266
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaa 195  Q
    ||||||||||| |||||||||||| | |||||||||||||| |||| | |||||| ||||    
T  3528207 ggtctatggtgaaccacctttaaatatggttcaccttagacttttgctattaaaaactaa 3528266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 7426815 - 7426723
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||  | ||||| |||| |||||| ||||| ||||| ||||    
T  7426815 ggtctatggtggaccacctttaaatatgattcaccttagacatttgatgttaaaaattgacggaaaggaataaaacagtaaatggcagtagac 7426723  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 7426936 - 7426860
Alignment:
Q  15 aagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatagaccctacatgatccaacaatcctc 91  Q
    |||||||||||||||||||||  ||| |||| ||||| ||||||||| | |||||||||||| ||||||||| ||||    
T  7426936 aagaaaggtgagaaaaatattaggtgatggtagtttacaataaaatacagtagaccctacatcatccaacaaacctc 7426860  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 19525230 - 19525322
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 228  Q
    ||||||||||||||||| | ||||   |||||||| |||| |||| | ||||||| | |||||||||||| |||| |||||||||||||||||    
T  19525230 ggtctatggtggaccacatataaagttggttcaccatagaaatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggcagaagac 19525322  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 40058192 - 40058101
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||| || | ||||   |||||||||||||||||| |  |||||| |||||||||| ||| |||| ||||||||||||||||    
T  40058192 ggtctatggtggactacttataaagttggttcaccttagacatttaagattaaaaactaacggagatgaccaaaatggtaaacggcagaaga 40058101  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 18693872 - 18693798
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    ||||||||||| |||||||||| | | |||||||||||||  ||||||||||||| ||||| |||||||| ||||    
T  18693872 ggtctatggtgaaccacctttatatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaa 18693798  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 5383116 - 5383048
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagagga 204  Q
    ||||||||||||||||||| ||||   | |||||||||||||||| | ||||||| |||||||||||||    
T  5383116 ggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaaaactaacggagagga 5383048  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 21387808 - 21387720
Alignment:
Q  139 ctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||| |||||||||||| | | |||||||||||  ||||||||||||| ||||| || ||||| ||||  |  ||||||||||||    
T  21387808 ctatggtgaaccacctttaaatatgtttcaccttagagttttgatgttaaaaactaacagacaggaccaaaagaggtaacggcagaaga 21387720  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 42510257 - 42510197
Alignment:
Q  167 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| ||||||||||| ||||||| ||||||||||| || ||||  |||||||||||||||    
T  42510257 caccatagacatttgaggttaaaaactaacggagagaaccaaaatagtaaacggcagaaga 42510197  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 2167457 - 2167547
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||| || ||||   |||||||||||||||||| | ||||||| ||||| |||| ||| ||||   ||||||||||||||    
T  2167457 ggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaaaaactaacagaga-gaccaaaataataaacggcagaaga 2167547  T

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Target: scaffold0025 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 56509 - 56593
Alignment:
Q  5 gaagaatatgaagaaaggtgagaaaaatatttagtgttggttgtttataataaaatataatag-accctacatgatccaacaatc 88  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||| ||||||||| ||||| || |||| |||||||||||||    
T  56509 gaagaagatgaagaaaggtgagaaaaatattaggtgttggtggtttacaataaaatacaatagaacactacgtgatccaacaatc 56593  T

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Target: scaffold0025; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 56642 - 56733
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    ||||| |||||||||| |||||||||  |||  ||||||| |||||||||||||| ||||  |||||||   |||| |||||||||||||||    
T  56642 ggtctttggtggaccatctttaaacatagtttcccttagatatttgatgttaaaaactaatagagaggatctaaacagtaaacggcagaaga 56733  T

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Target: scaffold0122 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 16119 - 16033
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggca 222  Q
    |||||||||||||||| || ||||   |||||| ||||||||||| | ||||||| |||||||||||||||||||  ||||||||||    
T  16119 ggtctatggtggaccatctataaagttggttcatcttagacatttaaggttaaaaactaacggagaggactaaaatagtaaacggca 16033  T

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Target: scaffold0084 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 13150 - 13220
Alignment:
Q  140 tatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||| |||| ||| ||||| ||||    
T  13150 tatggtggaccatctttaaatatggttcaccttagacatttgatgttaaaacctaatggataggaccaaaa 13220  T

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Target: scaffold1974 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 572 - 661
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| |||| |||| ||||||| | |||||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  572 tctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatggtaaacggcagaaga 661  T

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Target: scaffold1878 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 702 - 613
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| |||| |||| ||||||| | |||||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  702 tctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatggtaaacggcagaaga 613  T

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Target: scaffold0290 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 9422 - 9511
Alignment:
Q  138 tctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||| |||| |||| ||||||| | |||||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  9422 tctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatggtaaacggcagaaga 9511  T

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Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 39843 - 39917
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 210  Q
    |||| |||||| |||||||||||| | | |||||||||||| ||||||||||||| ||||| |||||||| ||||    
T  39843 ggtccatggtgaaccacctttaaatatgattcaccttagacttttgatgttaaaaactaacagagaggaccaaaa 39917  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 77121 - 77212
Alignment:
Q  136 ggtctatggtggaccacctttaaacacggttcaccttag--acatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 225  Q
    |||| ||||||||||||||||||| | ||||||||||||  ||||||||||| |||   ||||||||| ||| ||||| |||||||| ||||    
T  77121 ggtcaatggtggaccacctttaaatatggttcaccttagacacatttgatgtcaaacattaacggagaagaccaaaacagtaaacggtagaa 77212  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 47215 - 47153
Alignment:
Q  165 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 227  Q
    |||||||||||||||| | |||||||  ||||||||||||| ||||  |||||||| ||||||    
T  47215 ttcaccttagacatttaaagttaaaaattaacggagaggaccaaaatagtaaacggaagaaga 47153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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