View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18008_low_6 (Length: 239)
Name: NF18008_low_6
Description: NF18008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18008_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 46238593 - 46238812
Alignment:
| Q |
1 |
actttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagtt |
100 |
Q |
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| T |
46238593 |
actttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagatgtt |
46238692 |
T |
|
| Q |
101 |
gtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtctgtgtgtggggtcgtttaagacacgtgtctt |
200 |
Q |
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| T |
46238693 |
gtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtctgtgtgtggggtcgttaaagacacgtgtctt |
46238792 |
T |
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| Q |
201 |
aatgttattggtccaatttt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
46238793 |
aatgttattggtccaatttt |
46238812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 3456054 - 3455846
Alignment:
| Q |
12 |
tttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaatttttt |
111 |
Q |
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| T |
3456054 |
tttactcctaagaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaatttttt |
3455955 |
T |
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| Q |
112 |
agggtttttaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtctgtgtgtggggtcgtttaagacacgtgtcttaatgttattgg |
211 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
3455954 |
agggttttaaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtctgtgtgtggggtcttataagacacgtgtcttaatgttattgg |
3455855 |
T |
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| Q |
212 |
tccaatttt |
220 |
Q |
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||||||||| |
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| T |
3455854 |
tccaatttt |
3455846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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