View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18008_low_7 (Length: 207)
Name: NF18008_low_7
Description: NF18008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18008_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 7610637 - 7610463
Alignment:
| Q |
16 |
aaaatatccgaccatgcataccactagtcgtgtcccctcttcaccgtgcgtaagtttttgttcatcccatctttaatgcgtgtactatatgatagtgtgt |
115 |
Q |
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| T |
7610637 |
aaaatatccgaccatgcataccactagtcgtgtcccctcttcaccgtgcgtaagtttttgttcgtcccatctttaatgcgtgtactatatgatagtgtgt |
7610538 |
T |
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| Q |
116 |
actgttgttatagtcgatggaatgaaactgtcaattgccatttgaaagttgaagataggattggtgattgtactt |
190 |
Q |
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| T |
7610537 |
attgttgttatagtcgatggaatgaaactgtcaattgccatttgaaagttgaagataggattggtgattgtactt |
7610463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 9290342 - 9290252
Alignment:
| Q |
101 |
tatatgatagtgtgtactgttgttatagtcgatggaatgaaactgtcaattgccatttgaaagttgaagataggattggtgattgtacttg |
191 |
Q |
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| T |
9290342 |
tatatgatagtgtgtactgttgttatagtcgatggaatgaaactttcaattgccatttgaaaattgaaaataggattggtcactgtacttg |
9290252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 9314775 - 9314685
Alignment:
| Q |
101 |
tatatgatagtgtgtactgttgttatagtcgatggaatgaaactgtcaattgccatttgaaagttgaagataggattggtgattgtacttg |
191 |
Q |
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| T |
9314775 |
tatatgttagtgtgtactgttgttatagttgatggaatgaaactgtcaattgccatgtgaaaattgaagataggatcggtcactgtacttg |
9314685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 8575163 - 8575237
Alignment:
| Q |
101 |
tatatgatagtgtgtactgttgttatagtcgatggaatgaaactgtcaattgccatttgaaagttgaagatagga |
175 |
Q |
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| T |
8575163 |
tatatgatagtgtgtactgttgttataatcaatggaatgaaactgtctattgccatttgaaaattgaagttagga |
8575237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 19393553 - 19393603
Alignment:
| Q |
101 |
tatatgatagtgtgtactgttgttatagtcgatggaatgaaactgtcaatt |
151 |
Q |
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| T |
19393553 |
tatatgatagtgtgtactgttgttatagtcgacggaatgaaactgtcaatt |
19393603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 9069799 - 9069875
Alignment:
| Q |
101 |
tatatgatagtgtgtactgttgttatagtcgatggaatgaaactgtcaattgccatttgaaagttgaagataggattggt |
180 |
Q |
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| T |
9069799 |
tatatgatattgtgttctgttgttagagtcgatggaatgag---gtcaattgtcatttgaaagttgaagataggattggt |
9069875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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