View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_high_10 (Length: 252)
Name: NF18009_high_10
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 39609164 - 39608960
Alignment:
| Q |
28 |
gtgagatgaacagttaaattgactataaagtgatctatgtttgaataaaatcgagactataaatcatgtttggatttaaaaattccaaatcacaatttca |
127 |
Q |
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| T |
39609164 |
gtgaaatgaacagttaaattgactataaagtgatctatgtttgaataaaatcgagactataaatcatgtttgaatttaaaaattccaaatcacaatttca |
39609065 |
T |
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| Q |
128 |
agttaaagttagtgcatgtttggtttgatggaatgatggtgagccaccatgattttggctaaagttacactttaaagtttcagtttgaagtttcaacaaa |
227 |
Q |
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| T |
39609064 |
agttaaagttagtgcatgtttggtttgatggaatgatggtgagccaccatgattttggctaaagttacactttaaagtttcagtttaaagtttcaacaaa |
39608965 |
T |
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| Q |
228 |
cccac |
232 |
Q |
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||||| |
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| T |
39608964 |
cccac |
39608960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 39609553 - 39609469
Alignment:
| Q |
71 |
aataaaatcgagactataaatcatgtttggatttaaaaattccaaatcacaatttcaagttaaagttagtgcatgtttggtttga |
155 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||| |
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| T |
39609553 |
aataaaattgagactataaatcatgtttggatttaaaaattccaaatcaaaatttcaagttagagttagtacatgtttggattga |
39609469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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