View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_high_14 (Length: 213)
Name: NF18009_high_14
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 23430860 - 23431045
Alignment:
| Q |
16 |
atgaagatgcaatgttaagtgttcattttcttggattgtttgtttatatgggatggatccaaagaaaactattaaatcaggggctgttaaattatcataa |
115 |
Q |
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| T |
23430860 |
atgaagatgcaatgttaagtgttcattttcttggattgtttgtttatatgggatggctccaaagaaaactattaaatcaggggttgttaaattatcataa |
23430959 |
T |
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| Q |
116 |
cacccatttaaatttttaactatattaaccatttctttactgacttatttctaa--actcaattaggggctggaaaacatacatat |
199 |
Q |
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| T |
23430960 |
cacccatttaagtttttaactatattaactatttctttactgacttatttctaaacactcaattaggggctggaaaacatacatat |
23431045 |
T |
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