View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_high_3 (Length: 556)
Name: NF18009_high_3
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 42929494 - 42929729
Alignment:
| Q |
22 |
aaaattagacaattagttcaaccgatgaccggaaaccggtggccaaagaaaataaaagtgtgaattttcttttatctgttgtctcacaaagtcatacatg |
121 |
Q |
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| T |
42929494 |
aaaattagacaattagttcaaccgatgaccggaaaccggtggccaaagaaaataaaagtgtgaattttcttttatctgttgtctcacaaagtcatacatg |
42929593 |
T |
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| Q |
122 |
tttaatgtgagtaggcatagtattgaatttcatttcctcggttgaagacttggaaagtaacgtatatgctatgatgatattatcactctcatgcattgtg |
221 |
Q |
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| T |
42929594 |
tttaatgtgggtaggcatagtattgaatttcatttcctcggttgaagacttggaaagtaacgtatatgctatgatgatattatcactctcatgcattgtg |
42929693 |
T |
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| Q |
222 |
gatgaagnnnnnnnnaaggattgtggataaagtgaa |
257 |
Q |
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| T |
42929694 |
gatgaagttttttttaaggattgtggataaagtgaa |
42929729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 316 - 537
Target Start/End: Original strand, 42929841 - 42930060
Alignment:
| Q |
316 |
cagtaacacaatacagatttattcttttatgattttagcgcacacatgatataagagatagtatcattattttataatatcatgagttggtgaacacaaa |
415 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929841 |
cagtaacacaatggagatttattcttttatgattttagcgcacacatgatataagagatagtatcattattttataatatcatgagttggtgaacacaaa |
42929940 |
T |
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| Q |
416 |
tttttcaagatataaagctattgaaaaacgtaannnnnnnnnncttcaatcaagagagtaatcaatgattaagaagtagagataagaatagaaaaattgg |
515 |
Q |
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| T |
42929941 |
tttttcaagatataaagctattgaaaaacataattttttttt--ttcaataaagagagtaatcaatgattaagaagtagagataagaatagaaaaattgg |
42930038 |
T |
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| Q |
516 |
gagcccaagaaaatggttttat |
537 |
Q |
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| T |
42930039 |
tagcccaagaaaatggttttat |
42930060 |
T |
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