View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18009_high_4 (Length: 498)

Name: NF18009_high_4
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18009_high_4
NF18009_high_4
[»] chr4 (29 HSPs)
chr4 (275-482)||(29891685-29891893)
chr4 (16-185)||(29891970-29892143)
chr4 (16-118)||(29889006-29889113)
chr4 (16-126)||(29886691-29886805)
chr4 (331-426)||(29885753-29885846)
chr4 (362-426)||(29888876-29888940)
chr4 (126-185)||(50831642-50831701)
chr4 (253-303)||(2738280-2738330)
chr4 (253-303)||(38864748-38864798)
chr4 (253-289)||(28458389-28458425)
chr4 (253-289)||(32696204-32696240)
chr4 (253-289)||(37060340-37060376)
chr4 (253-289)||(51255769-51255805)
chr4 (253-288)||(5932776-5932811)
chr4 (253-288)||(32012920-32012955)
chr4 (127-174)||(42491210-42491257)
chr4 (253-288)||(43175007-43175042)
chr4 (253-288)||(45083004-45083039)
chr4 (253-288)||(50721757-50721792)
chr4 (253-288)||(50890086-50890121)
chr4 (253-303)||(336820-336869)
chr4 (253-303)||(1795994-1796044)
chr4 (253-303)||(3078920-3078970)
chr4 (253-303)||(14443207-14443257)
chr4 (253-303)||(42815413-42815463)
chr4 (125-163)||(52895404-52895442)
chr4 (253-289)||(30170032-30170068)
chr4 (253-289)||(31574952-31574988)
chr4 (253-289)||(38519816-38519852)
[»] chr7 (17 HSPs)
chr7 (125-184)||(49069370-49069429)
chr7 (255-303)||(22195144-22195192)
chr7 (253-289)||(12007198-12007234)
chr7 (253-289)||(47448849-47448885)
chr7 (253-288)||(2008870-2008905)
chr7 (253-288)||(13152616-13152651)
chr7 (253-288)||(49069273-49069308)
chr7 (253-303)||(6353734-6353783)
chr7 (253-303)||(37385246-37385295)
chr7 (253-303)||(42598220-42598270)
chr7 (253-282)||(9792796-9792825)
chr7 (255-288)||(15325652-15325685)
chr7 (253-282)||(31398153-31398182)
chr7 (262-303)||(31467737-31467778)
chr7 (124-156)||(23679696-23679728)
chr7 (253-289)||(32777719-32777755)
chr7 (131-163)||(36467781-36467813)
[»] chr5 (13 HSPs)
chr5 (253-303)||(19844321-19844371)
chr5 (253-303)||(611873-611923)
chr5 (253-303)||(13309891-13309941)
chr5 (253-289)||(20770154-20770190)
chr5 (253-303)||(11148520-11148570)
chr5 (132-174)||(38704090-38704132)
chr5 (122-163)||(36321679-36321720)
chr5 (253-289)||(6517735-6517771)
chr5 (127-163)||(8097397-8097433)
chr5 (253-289)||(8920101-8920137)
chr5 (253-289)||(13089794-13089830)
chr5 (125-185)||(21353269-21353329)
chr5 (125-185)||(22972242-22972302)
[»] chr2 (18 HSPs)
chr2 (127-184)||(7258449-7258506)
chr2 (253-303)||(5054183-5054233)
chr2 (253-289)||(14876980-14877016)
chr2 (253-288)||(37316827-37316862)
chr2 (253-303)||(7502440-7502490)
chr2 (253-303)||(7664081-7664131)
chr2 (255-288)||(8848710-8848743)
chr2 (255-288)||(27490745-27490778)
chr2 (253-289)||(2144742-2144778)
chr2 (253-289)||(2221016-2221052)
chr2 (253-289)||(2563727-2563763)
chr2 (253-289)||(6170653-6170689)
chr2 (253-289)||(6999080-6999116)
chr2 (253-289)||(8427575-8427611)
chr2 (253-289)||(13765423-13765459)
chr2 (253-289)||(14871870-14871906)
chr2 (131-163)||(14890980-14891012)
chr2 (253-289)||(18737886-18737922)
[»] chr6 (10 HSPs)
chr6 (253-288)||(3853320-3853355)
chr6 (253-303)||(8505786-8505836)
chr6 (253-303)||(11635547-11635597)
chr6 (253-288)||(8645332-8645367)
chr6 (253-288)||(33712344-33712379)
chr6 (253-303)||(2242034-2242084)
chr6 (253-289)||(17551391-17551427)
chr6 (253-289)||(18141313-18141349)
chr6 (253-289)||(20822880-20822916)
chr6 (253-289)||(32459529-32459565)
[»] chr3 (22 HSPs)
chr3 (253-288)||(34456814-34456849)
chr3 (253-288)||(44463380-44463415)
chr3 (253-303)||(19150331-19150381)
chr3 (261-303)||(34627902-34627944)
chr3 (253-303)||(41637292-41637342)
chr3 (253-303)||(50559224-50559274)
chr3 (253-288)||(41443203-41443238)
chr3 (127-185)||(9719336-9719394)
chr3 (253-303)||(11630761-11630811)
chr3 (127-173)||(19960522-19960568)
chr3 (253-303)||(35299885-35299935)
chr3 (253-303)||(39629851-39629901)
chr3 (253-303)||(41505500-41505549)
chr3 (254-303)||(1796059-1796108)
chr3 (129-174)||(11056823-11056868)
chr3 (253-289)||(7933997-7934033)
chr3 (253-289)||(9862556-9862592)
chr3 (253-289)||(10811158-10811194)
chr3 (253-297)||(22237155-22237199)
chr3 (253-289)||(48353019-48353055)
chr3 (253-289)||(49417598-49417634)
chr3 (253-289)||(55400022-55400058)
[»] chr8 (14 HSPs)
chr8 (253-303)||(33451575-33451625)
chr8 (253-289)||(14707356-14707392)
chr8 (253-289)||(28772136-28772172)
chr8 (253-288)||(1068630-1068665)
chr8 (121-172)||(10592191-10592242)
chr8 (253-303)||(6440090-6440140)
chr8 (253-303)||(13884173-13884222)
chr8 (253-303)||(37942919-37942969)
chr8 (253-289)||(3946263-3946299)
chr8 (253-289)||(7598731-7598767)
chr8 (253-289)||(10592293-10592329)
chr8 (253-289)||(26026919-26026955)
chr8 (253-285)||(41600336-41600368)
chr8 (253-289)||(44061740-44061776)
[»] chr1 (29 HSPs)
chr1 (253-303)||(49931562-49931612)
chr1 (253-303)||(50775169-50775219)
chr1 (253-289)||(9566973-9567009)
chr1 (253-289)||(48983680-48983716)
chr1 (253-288)||(3558870-3558905)
chr1 (253-288)||(17082755-17082790)
chr1 (253-288)||(24806234-24806269)
chr1 (253-288)||(27742641-27742676)
chr1 (253-296)||(45008176-45008219)
chr1 (253-288)||(48858847-48858882)
chr1 (253-303)||(11947804-11947854)
chr1 (253-303)||(30536000-30536050)
chr1 (253-303)||(51286379-51286429)
chr1 (127-185)||(51571234-51571292)
chr1 (255-288)||(18434818-18434851)
chr1 (124-173)||(48261277-48261326)
chr1 (253-289)||(649791-649827)
chr1 (253-289)||(4213095-4213131)
chr1 (253-289)||(10890058-10890094)
chr1 (253-289)||(13489685-13489721)
chr1 (253-289)||(15705074-15705110)
chr1 (257-289)||(19947757-19947789)
chr1 (253-289)||(32915084-32915120)
chr1 (253-289)||(40439852-40439888)
chr1 (253-289)||(47214231-47214267)
chr1 (253-289)||(47642619-47642655)
chr1 (253-289)||(47721432-47721468)
chr1 (253-289)||(47728424-47728460)
chr1 (253-289)||(52362505-52362541)
[»] scaffold0034 (1 HSPs)
scaffold0034 (253-289)||(101918-101954)
[»] scaffold0128 (1 HSPs)
scaffold0128 (253-288)||(10960-10995)
[»] scaffold0041 (1 HSPs)
scaffold0041 (253-303)||(34417-34466)
[»] scaffold0449 (1 HSPs)
scaffold0449 (259-303)||(7857-7900)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 275 - 482
Target Start/End: Complemental strand, 29891893 - 29891685
Alignment:
Q  275 aaagttgtcaaaaaacaattgtacaaataacttcaag-atatcccaaggacaaaagtaatagttcttacatatcgagacatgccctcaaggatatcccat 373  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29891893 aaagttgtcaaaaaataattatacaaataacttcaaggatatcccaaggacaaaagtaatagttcttacatatcgagacataccctcaaggatatcccat 29891794  T
Q  374 cacatggacccctcattttataaaacagagtcaaatgtaaggaatagttttttnnnnnnnnnnnnnntgtgaaagagatgcaattttatcaattgagttg 473  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||              |||||||||||| ||||||||||||||||||||    
T  29891793 cacatggacccctcattttataaaacagagtcaaatgtaagtaatagttttttaaaaataaaaaaaatgtgaaagagatacaattttatcaattgagttg 29891694  T
Q  474 gcattagct 482  Q
    |||||||||    
T  29891693 gcattagct 29891685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 29892143 - 29891970
Alignment:
Q  16 atgtcaagtgaggtcacaaacaagagtcgcatgcatctactttatattcatgtat-----cacatcattggataaaatttgttgatgtgttagtggaaaa 110  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||     |||||||||| |||||| ||||||||||||||||||||||    
T  29892143 atgtcaagtgaggtcacaaataagagtcacatgcatctactttatattcatgtatattgtcacatcattg-ataaaacttgttgatgtgttagtggaaaa 29892045  T
Q  111 gagggtaattctataagagttgtgttatttgaataaccatttgattaacaactattgagacaactattattttac 185  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  29892044 gagggtaactctataagagttgtgttatttgaataaccatttgattaacaactattgagacaaccataattttac 29891970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 29889113 - 29889006
Alignment:
Q  16 atgtcaagtgaggtcacaaacaagagtcgcatgcatctactttatattcatgtat-----cacatcattggataaaatttgttgatgtgttagtggaaaa 110  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||     ||||||||||||||||  |||||||||||||||| |||||    
T  29889113 atgtcaagtgaggtcacaaacaagagtcacatacatctacttcatattcatgcatattgccacatcattggataaagcttgttgatgtgttagttgaaaa 29889014  T
Q  111 gagggtaa 118  Q
    ||||||||    
T  29889013 gagggtaa 29889006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 29886805 - 29886691
Alignment:
Q  16 atgtcaagtgaggtcacaaacaagagtcgcatgcatctactttatattcatgta-----tcacatcattggataaaatttgttgatgtgttagtggaaaa 110  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||     |||||||||||||||||  ||| |||||||||||| |||||    
T  29886805 atgtcaagtgaggtcacaaaaaagagtcacatgcatctacttcatattcatgtatattgtcacatcattggataaagcttggtgatgtgttagttgaaaa 29886706  T
Q  111 gagggtaattctataa 126  Q
     ||||||| |||||||    
T  29886705 -agggtaactctataa 29886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 426
Target Start/End: Complemental strand, 29885846 - 29885753
Alignment:
Q  331 aatagttcttacatatcgagacatgccctcaaggatatcccatcacatggacccctcattttataaaacagagtcaaatgtaaggaatagtttttt 426  Q
    ||||||||| |||||| ||||||| |||| |||||||||  ||||||||||||| ||||||||||| | |||||| |||||||| |||||||||||    
T  29885846 aatagttct-acatattgagacatacccttaaggatatctaatcacatggaccc-tcattttataatatagagtccaatgtaagtaatagtttttt 29885753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 29888940 - 29888876
Alignment:
Q  362 aggatatcccatcacatggacccctcattttataaaacagagtcaaatgtaaggaatagtttttt 426  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || | |||||| ||| |||||||    
T  29888940 aggatatcccatcacatggacccgtcattttataatacagactccattgtaagtaatcgtttttt 29888876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 50831642 - 50831701
Alignment:
Q  126 agagttgtgttatttgaataaccatttgattaacaactattgagacaactattattttac 185  Q
    |||||||||||||||||| |||||||||||| |||||| ||| |||||| || |||||||    
T  50831642 agagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttac 50831701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 2738280 - 2738330
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  2738280 tatgagagagaaagttatcacaaaaattgtcaaaaaatgattgttcaaata 2738330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 38864748 - 38864798
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||| ||||||||||| |||| |||||||||||||    
T  38864748 tatgagagagaaagttgtcaaaaaagttgtcacaaaataattgtacaaata 38864798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 28458389 - 28458425
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28458389 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 28458425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 32696240 - 32696204
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32696240 tatgagagagaaagttatcacaatagttgtcaaaaaa 32696204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 37060376 - 37060340
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37060376 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 37060340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 51255805 - 51255769
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  51255805 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 51255769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 5932776 - 5932811
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  5932776 tatgagagagaaagttgtcacaaaagttgtcaaaaa 5932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 32012955 - 32012920
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  32012955 tatgagagagaaagttgtcacaaaagttgtcaaaaa 32012920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 42491257 - 42491210
Alignment:
Q  127 gagttgtgttatttgaataaccatttgattaacaactattgagacaac 174  Q
    ||||||||||||||||| |||||||||||| |||||| ||| ||||||    
T  42491257 gagttgtgttatttgaacaaccatttgattgacaacttttgggacaac 42491210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 43175042 - 43175007
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||||||||||||||||| |||||    
T  43175042 tatgagagagaaagttatcacaaaagttgtaaaaaa 43175007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 45083039 - 45083004
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||||||||||| ||||||||||||||||||||||    
T  45083039 tatgagagagaaaattatcacaaaagttgtcaaaaa 45083004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 50721757 - 50721792
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||| ||||||||||||||||||||||||||||||    
T  50721757 tatgaaagagaaagttatcacaaaagttgtcaaaaa 50721792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 50890086 - 50890121
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  50890086 tatgagagagaaagttgtcacaaaagttgtcaaaaa 50890121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 336820 - 336869
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| |||||||| ||||| ||||| |||||||||||||    
T  336820 tatgagagagaaagttgtcacaaaaattgtc-aaaaataattgtacaaata 336869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 1795994 - 1796044
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||| |||||||||||||||||||| ||||||   |||||||||||    
T  1795994 tatgagagataaagttatcacaaaagttgttaaaaaattgttgtacaaata 1796044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 3078920 - 3078970
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||| | ||||  ||||||||||||    
T  3078920 tatgagagagaaagttgtcacaaaagttgttacaaaatgattgtacaaata 3078970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 14443257 - 14443207
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||||||| || ||||||||||||||||||||  ||||| ||||||    
T  14443257 tatgagagagaaaattgtcacaaaagttgtcaaaaaatgattgttcaaata 14443207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 42815463 - 42815413
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||| | |||| | |||||||||||    
T  42815463 tatgagagagaaagttgtcacaaaagttgttacaaaatagttgtacaaata 42815413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 52895442 - 52895404
Alignment:
Q  125 aagagttgtgttatttgaataaccatttgattaacaact 163  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  52895442 aagagttgtgttatttgaacaaccatttgattgacaact 52895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 30170032 - 30170068
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  30170032 tatgagagagaaagttgtcacaaaagttgtcataaaa 30170068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 31574952 - 31574988
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  31574952 tatgagagagaaaattatcacaaaagttgtcagaaaa 31574988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 38519852 - 38519816
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| |||||||| |||||||||||    
T  38519852 tatgagagagaaagttgtcacaaaaattgtcaaaaaa 38519816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 49069429 - 49069370
Alignment:
Q  125 aagagttgtgttatttgaataaccatttgattaacaactattgagacaactattatttta 184  Q
    ||||||||||||||||||| |||||||||||| |||||| ||| ||||||||| ||||||    
T  49069429 aagagttgtgttatttgaacaaccatttgattgacaacttttgggacaactataatttta 49069370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 22195144 - 22195192
Alignment:
Q  255 tgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||||||||||||||||||||| || |||| ||||||    
T  22195144 tgagagagaaagttatcacaaaagttgtcaaaaatcagttgttcaaata 22195192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 12007198 - 12007234
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  12007198 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 12007234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 47448885 - 47448849
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  47448885 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 47448849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 2008870 - 2008905
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  2008870 tatgagagagaaagttgtcacaaaagttgtcaaaaa 2008905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 13152651 - 13152616
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  13152651 tatgagagagaaagttgtcacaaaagttgtcaaaaa 13152616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 49069308 - 49069273
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||||||||||| ||||||||||||||||||||||    
T  49069308 tatgagagagaaaattatcacaaaagttgtcaaaaa 49069273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 6353783 - 6353734
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||||||||||||||||||| |||||||||||   |||||||||||    
T  6353783 tatgagagagaaagttatcacaaaa-ttgtcaaaaaatggttgtacaaata 6353734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 37385246 - 37385295
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| | |||||||||||||||||| | |||||||||||    
T  37385246 tatgagagagaaagttgt-acaaaagttgtcaaaaaatagttgtacaaata 37385295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 42598220 - 42598270
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||| ||||||||||||||| |||| |||||| | |||||||||||    
T  42598220 tatgagagataaagttatcacaaaaattgttaaaaaatagttgtacaaata 42598270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 9792825 - 9792796
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgt 282  Q
    ||||||||||||||||||||||||||||||    
T  9792825 tatgagagagaaagttatcacaaaagttgt 9792796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 15325652 - 15325685
Alignment:
Q  255 tgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||| |||||||||||||||||||    
T  15325652 tgagagagaaagttgtcacaaaagttgtcaaaaa 15325685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 31398182 - 31398153
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgt 282  Q
    ||||||||||||||||||||||||||||||    
T  31398182 tatgagagagaaagttatcacaaaagttgt 31398153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 31467737 - 31467778
Alignment:
Q  262 gaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||||||||||  |||| ||||||||||||    
T  31467737 gaaagttatcacaaaagttgtcatcaaacgattgtacaaata 31467778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 23679696 - 23679728
Alignment:
Q  124 taagagttgtgttatttgaataaccatttgatt 156  Q
    |||||||||||||||||||||||| ||||||||    
T  23679696 taagagttgtgttatttgaataactatttgatt 23679728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 32777719 - 32777755
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  32777719 tatgagagagaaagttgtcataaaagttgtcaaaaaa 32777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 36467813 - 36467781
Alignment:
Q  131 tgtgttatttgaataaccatttgattaacaact 163  Q
    ||||||||||||||||| |||||||||||||||    
T  36467813 tgtgttatttgaataactatttgattaacaact 36467781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 19844321 - 19844371
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  19844321 tatgagagagaaagttatcacaaaagttatcaaaaaatagttgtacaaata 19844371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 611923 - 611873
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| |||||||||||||||||||  |||||| ||||||    
T  611923 tatgagagagaaagttgtcacaaaagttgtcaaaaagtaattgttcaaata 611873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 13309941 - 13309891
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||||||||||||||||||| ||||||||||| | |||| ||||||    
T  13309941 tatgagagagaaagttatcacaaaaattgtcaaaaaatagttgttcaaata 13309891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 20770190 - 20770154
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  20770190 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 20770154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 11148570 - 11148520
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||| ||| |||||||||||||||||||   ||||||||||||    
T  11148570 tatgagagagaatgttgtcacaaaagttgtcaaaaattgattgtacaaata 11148520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 38704090 - 38704132
Alignment:
Q  132 gtgttatttgaataaccatttgattaacaactattgagacaac 174  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||    
T  38704090 gtgttatttgaacaaccatttgattaacaacttttgggacaac 38704132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 36321679 - 36321720
Alignment:
Q  122 tataagagttgtgttatttgaataaccatttgattaacaact 163  Q
    |||| ||| ||||||||||||| |||||||||||||||||||    
T  36321679 tatatgaggtgtgttatttgaacaaccatttgattaacaact 36321720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 6517771 - 6517735
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  6517771 tatgagagagaaagttgtcacaaaagttgtcataaaa 6517735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 8097433 - 8097397
Alignment:
Q  127 gagttgtgttatttgaataaccatttgattaacaact 163  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  8097433 gagttgtgttatttgaacaaccatttgattgacaact 8097397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 8920137 - 8920101
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  8920137 tatgagagagaaagttgtcacaaaagttgtcacaaaa 8920101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 13089794 - 13089830
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  13089794 tatgaaagagaaagttgtcacaaaagttgtcaaaaaa 13089830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 21353329 - 21353269
Alignment:
Q  125 aagagttgtgttatttgaataaccatttgattaacaactattgagacaactattattttac 185  Q
    |||||||| ||||||| || |||||||||||| |||||| ||| |||||| || |||||||    
T  21353329 aagagttgagttatttaaacaaccatttgattgacaacttttgggacaaccataattttac 21353269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 22972302 - 22972242
Alignment:
Q  125 aagagttgtgttatttgaataaccatttgattaacaactattgagacaactattattttac 185  Q
    ||||||||||||||||||| | ||||||   |||||||| ||||||||||||  |||||||    
T  22972302 aagagttgtgttatttgaacatccatttatataacaacttttgagacaactaaaattttac 22972242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 7258449 - 7258506
Alignment:
Q  127 gagttgtgttatttgaataaccatttgattaacaactattgagacaactattatttta 184  Q
    ||||||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||    
T  7258449 gagttgtgttatttgaacaaccatttgattaacaatttttgggacaactataatttta 7258506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 5054183 - 5054233
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||||||    
T  5054183 tatgaaagagaaagttgtcacaaaagttgtcaaaatataattgtacaaata 5054233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 14877016 - 14876980
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14877016 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 14876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 37316827 - 37316862
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  37316827 tatgagagagaaagttgtcacaaaagttgtcaaaaa 37316862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 7502440 - 7502490
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| |||||||| |||||||||||   |||||||||||    
T  7502440 tatgagagagaaagttgtcacaaaaattgtcaaaaaatggttgtacaaata 7502490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 7664081 - 7664131
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||| ||||||    
T  7664081 tatgagatagaaagttatcacaaaaattgtccaaaaataattgttcaaata 7664131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 8848710 - 8848743
Alignment:
Q  255 tgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||| |||||||||||||||||||    
T  8848710 tgagagagaaagttgtcacaaaagttgtcaaaaa 8848743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 27490745 - 27490778
Alignment:
Q  255 tgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||| |||||||||||||||||||    
T  27490745 tgagagagaaagttgtcacaaaagttgtcaaaaa 27490778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 2144778 - 2144742
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2144778 tatgggagagaaagttatcacaaacgttgtcaaaaaa 2144742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 2221052 - 2221016
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  2221052 tatgagagagaaagttatcacaaaaattgtcacaaaa 2221016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 2563763 - 2563727
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  2563763 tatgagagagaaagttgtcacaaaagttgtcataaaa 2563727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 6170689 - 6170653
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  6170689 tatgagagagaaagttgtcacaaaagttgtcataaaa 6170653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 6999080 - 6999116
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  6999080 tatgagagagaaagttgtcacaaaagttgtcataaaa 6999116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 8427611 - 8427575
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| |||||||| |||||||||||    
T  8427611 tatgagagagaaagttgtcacaaaaattgtcaaaaaa 8427575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 13765459 - 13765423
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  13765459 tatgagagagaaagttgtcacaaaagttgtcataaaa 13765423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 14871906 - 14871870
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||| | ||||||||||||||||||||    
T  14871906 tatgagagagaaagctgtcacaaaagttgtcaaaaaa 14871870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 14890980 - 14891012
Alignment:
Q  131 tgtgttatttgaataaccatttgattaacaact 163  Q
    ||||||||||||| |||||||||||||||||||    
T  14890980 tgtgttatttgaacaaccatttgattaacaact 14891012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 18737886 - 18737922
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  18737886 tatgagagagaaagttgtcacaaaagttgttaaaaaa 18737922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 3853320 - 3853355
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||||||||||||||||||||||||||||||||||    
T  3853320 tatgagagagaaagttatcacaaaagttgtcaaaaa 3853355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 8505786 - 8505836
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||||||||||  ||||| ||||||    
T  8505786 tatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaata 8505836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 11635547 - 11635597
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||||||||||  ||||| ||||||    
T  11635547 tatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaata 11635597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 8645367 - 8645332
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  8645367 tatgagagagaaagttgtcacaaaagttgtcaaaaa 8645332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 33712379 - 33712344
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  33712379 tatgagagagaaagttgtcacaaaagttgtcaaaaa 33712344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 2242034 - 2242084
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| |||||||| |||||||||||  ||||| ||||||    
T  2242034 tatgagagagaaagttgtcacaaaaattgtcaaaaaatgattgttcaaata 2242084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 17551391 - 17551427
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| | ||||||||||||||||||    
T  17551391 tatgagagagaaagttgttacaaaagttgtcaaaaaa 17551427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 18141313 - 18141349
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  18141313 tatgagagagaaagttgtcacaaaagttgtcataaaa 18141349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 20822880 - 20822916
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  20822880 tatgagagagaaagttgtcacaaaagttgtcataaaa 20822916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 32459529 - 32459565
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  32459529 tatgagagagaaagttgtcacaaaagttgtcataaaa 32459565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 34456849 - 34456814
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||||||||||||||||||||||||||||||||||    
T  34456849 tatgagagagaaagttatcacaaaagttgtcaaaaa 34456814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 44463415 - 44463380
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||||||||||||||||||||||||||||||||||    
T  44463415 tatgagagagaaagttatcacaaaagttgtcaaaaa 44463380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 19150331 - 19150381
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||| ||||||  ||||||||||||    
T  19150331 tatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaata 19150381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 34627902 - 34627944
Alignment:
Q  261 agaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  34627902 agaaagttatcacaaaagttgtcaaaaaatagttgtacaaata 34627944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 41637292 - 41637342
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||| ||||||||||| |||||||||||||||||||| | |||||||||||    
T  41637292 tatgtgagagaaagttgtcacaaaagttgtcaaaaaatagttgtacaaata 41637342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 50559224 - 50559274
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||||||||||| || |||||||||||||||||||| | |||||||||||    
T  50559224 tatgagagagaaaattgtcacaaaagttgtcaaaaaatagttgtacaaata 50559274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 41443203 - 41443238
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41443203 tatgagagagaaaattatcacaaaagttgtcaaaaa 41443238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9719336 - 9719394
Alignment:
Q  127 gagttgtgttatttgaataaccatttgattaacaactattgagacaactattattttac 185  Q
    ||||||||||||||||| |||||||||||| |||||| ||| || ||| || |||||||    
T  9719336 gagttgtgttatttgaacaaccatttgattgacaacttttgggataaccataattttac 9719394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 11630761 - 11630811
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||| ||||||    
T  11630761 tatgaaagaaaaagttatcacaaaagttgtcaagaaataattgttcaaata 11630811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 19960522 - 19960568
Alignment:
Q  127 gagttgtgttatttgaataaccatttgattaacaactattgagacaa 173  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||||||    
T  19960522 gagttgtgttatttgattaatcatttgattgacaacttttgagacaa 19960568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 35299885 - 35299935
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||| ||| |||||||||| ||||||||||||||||  ||||||||||||    
T  35299885 tatgaaagaaaaagttatcataaaagttgtcaaaaaatgattgtacaaata 35299935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 39629851 - 39629901
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||| ||| ||||||||||||| |||||| | |||||||||||    
T  39629851 tatgagagagaaggttgtcacaaaagttgtaaaaaaatagttgtacaaata 39629901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 41505549 - 41505500
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||| |||||| |||||| ||||||    
T  41505549 tatgagagagaaagttgtcacaaaagttgt-aaaaaataattgttcaaata 41505500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 1796059 - 1796108
Alignment:
Q  254 atgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||| |||||| |||||||||||| |||  ||||||||||||    
T  1796059 atgagagagaaaattatcataaaagttgtcaataaattattgtacaaata 1796108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 11056823 - 11056868
Alignment:
Q  129 gttgtgttatttgaataaccatttgattaacaactattgagacaac 174  Q
    ||||||||||||||| |||||||||  |||||||| ||||||||||    
T  11056823 gttgtgttatttgaacaaccatttgtataacaacttttgagacaac 11056868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 7934033 - 7933997
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  7934033 tatgagagagaaaattatcacaaaagttgtaaaaaaa 7933997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 9862592 - 9862556
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| |||||||||||| |||||||    
T  9862592 tatgagagagaaagttgtcacaaaagttgacaaaaaa 9862556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 10811194 - 10811158
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  10811194 tatgagagagaaagttgtcacaaaagttgtcataaaa 10811158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 22237199 - 22237155
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgta 297  Q
    ||||||||| ||| |||||||||||||||||| |||| |||||||    
T  22237199 tatgagagaaaaaattatcacaaaagttgtcataaaataattgta 22237155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 48353055 - 48353019
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  48353055 tatgagagagaaagttgtcacaaaagttgttaaaaaa 48353019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 49417634 - 49417598
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  49417634 tatgagagagaaagttgtcacaaaagttgtcataaaa 49417598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 55400058 - 55400022
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  55400058 tatgagagagaaagttgtcacaaaagttgtcataaaa 55400022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 33451575 - 33451625
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||||||||||  ||||| ||||||    
T  33451575 tatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaata 33451625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 14707356 - 14707392
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||| |||||||||||||||||||||||||||||    
T  14707356 tatgagaaagaaagttatcacaaaagttgtcaaaaaa 14707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 28772136 - 28772172
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||||||||||||||||||||| |||||||||||    
T  28772136 tatgagagagaaagttatcacaaaaattgtcaaaaaa 28772172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 1068665 - 1068630
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  1068665 tatgagagagaaagttgtcacaaaagttgtcaaaaa 1068630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 10592191 - 10592242
Alignment:
Q  121 ctataagagttgtgttatttgaataaccatttgattaacaactattgagaca 172  Q
    |||| |||||||||||||||||| |||||||||||| |||||| ||| ||||    
T  10592191 ctattagagttgtgttatttgaacaaccatttgattgacaacttttgggaca 10592242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 6440140 - 6440090
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||| || ||| | |||||||||||    
T  6440140 tatgagagagaaagttgtcacaaaagttgtaaagaaatagttgtacaaata 6440090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 13884173 - 13884222
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  13884173 tatgagagagaaagttgtcacaaa-gttgtcaaaaaatgattgtacaaata 13884222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 37942919 - 37942969
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    ||||| ||| |||||| |||||||| ||||||||||| |||||||||||||    
T  37942919 tatgaaagaaaaagttgtcacaaaaattgtcaaaaaataattgtacaaata 37942969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 3946299 - 3946263
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  3946299 tatgagagagaaagttgtcacaaaagttgtcacaaaa 3946263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 7598767 - 7598731
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||  ||||||||||||||||||||    
T  7598767 tatgagagagaaagtggtcacaaaagttgtcaaaaaa 7598731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 10592293 - 10592329
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  10592293 tatgagagagaaagttgtcacaaaagttatcaaaaaa 10592329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 26026955 - 26026919
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  26026955 tatgagaaagaaagttgtcacaaaagttgtcaaaaaa 26026919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 41600368 - 41600336
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaa 285  Q
    |||||||||||||||| ||||||||||||||||    
T  41600368 tatgagagagaaagttgtcacaaaagttgtcaa 41600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 44061776 - 44061740
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  44061776 tatgagagagaaagttgtcacaaaagttatcaaaaaa 44061740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 49931612 - 49931562
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||| ||||||  ||||||||||||    
T  49931612 tatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaata 49931562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 50775169 - 50775219
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||| |||||    
T  50775169 tatgagagagaaagttgtcacaaaaattgtcaaaaaataattgtataaata 50775219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 9566973 - 9567009
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9566973 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 9567009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 48983680 - 48983716
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  48983680 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 48983716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 3558905 - 3558870
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||||||| |||||||||||||||    
T  3558905 tatgagagagaaagttatcataaaagttgtcaaaaa 3558870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 17082755 - 17082790
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  17082755 tatgagagagaaagttgtcacaaaagttgtcaaaaa 17082790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 24806234 - 24806269
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  24806234 tatgagagagaaagttgtcacaaaagttgtcaaaaa 24806269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 27742676 - 27742641
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  27742676 tatgagagagaaagttgtcacaaaagttgtcaaaaa 27742641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 45008176 - 45008219
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgt 296  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||    
T  45008176 tatgagagagaaagttattacaaaagttgtcacaaaataattgt 45008219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 48858882 - 48858847
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  48858882 tatgagagagaaagttgtcacaaaagttgtcaaaaa 48858847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 11947854 - 11947804
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||||| ||||   |||||||||||    
T  11947854 tatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaata 11947804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 30536050 - 30536000
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| |||||||| |||| ||||||  ||||||||||||    
T  30536050 tatgagagagaaagttgtcacaaaaattgttaaaaaatgattgtacaaata 30536000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 51286379 - 51286429
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||||||||||| |||| || ||| ||||||    
T  51286379 tatgagagagaaagttgtcacaaaagttgtcataaaataaatgttcaaata 51286429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 51571234 - 51571292
Alignment:
Q  127 gagttgtgttatttgaataaccatttgattaacaactattgagacaactattattttac 185  Q
    ||||||||||||||||| |||||||||||| |||| | ||| |||||| || |||||||    
T  51571234 gagttgtgttatttgaacaaccatttgattgacaatttttgggacaaccataattttac 51571292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 18434851 - 18434818
Alignment:
Q  255 tgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||| |||||||||||||||||||    
T  18434851 tgagagagaaagttgtcacaaaagttgtcaaaaa 18434818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 48261326 - 48261277
Alignment:
Q  124 taagagttgtgttatttgaataaccatttgattaacaactattgagacaa 173  Q
    |||||||||||||||||||||| | |||||||  |||||| |||||||||    
T  48261326 taagagttgtgttatttgaatacctatttgatagacaacttttgagacaa 48261277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 649827 - 649791
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  649827 tatgagagagaaagttgtcacaaaagttgtaaaaaaa 649791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 4213131 - 4213095
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  4213131 tatgagagagaaagttgtcacaaaagttatcaaaaaa 4213095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 10890058 - 10890094
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  10890058 tatgagagagaaagttgtcacaaaagttgtcataaaa 10890094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 13489721 - 13489685
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  13489721 tatgagagagaaagttgtcacaaaagttgtcataaaa 13489685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 15705074 - 15705110
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  15705074 tatgagagagaaagttgtcacaaaagttgtcataaaa 15705110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 19947757 - 19947789
Alignment:
Q  257 agagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||| ||||||||||||||||||||    
T  19947757 agagagaaagttgtcacaaaagttgtcaaaaaa 19947789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 32915084 - 32915120
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  32915084 tatgagagagaaagttgtcacaaaagttgtcataaaa 32915120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 40439852 - 40439888
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  40439852 tatgagagagaaagttgtcataaaagttgtcaaaaaa 40439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 47214267 - 47214231
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  47214267 tatgagagagaaagttgtcacaaaagttgtcataaaa 47214231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 47642619 - 47642655
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  47642619 tatgagagagaaagttgtcacaaaagttatcaaaaaa 47642655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 47721468 - 47721432
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  47721468 tatgagacagaaagttgtcacaaaagttgtcaaaaaa 47721432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 47728460 - 47728424
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  47728460 tatgagacagaaagttgtcacaaaagttgtcaaaaaa 47728424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 52362541 - 52362505
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  52362541 tatgagagagaaagttgtcacaaaagttgtcataaaa 52362505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 101918 - 101954
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaa 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  101918 tatgagagagaaagttgtcacaaaagttgtcaaaaaa 101954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 10995 - 10960
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaa 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  10995 tatgagagagaaagttgtcacaaaagttgtcaaaaa 10960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 34466 - 34417
Alignment:
Q  253 tatgagagagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||||||||| ||||||| |||||||||||| | |||||||||||    
T  34466 tatgagagagaaagttgtcacaaa-gttgtcaaaaaatagttgtacaaata 34417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 7900 - 7857
Alignment:
Q  259 agagaaagttatcacaaaagttgtcaaaaaacaattgtacaaata 303  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||    
T  7900 agagaaagttgtcacaaaa-ttgtcaaaaaataattgtacaaata 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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