View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18009_high_6 (Length: 414)

Name: NF18009_high_6
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18009_high_6
NF18009_high_6
[»] chr1 (11 HSPs)
chr1 (13-396)||(51850197-51850580)
chr1 (258-395)||(51820648-51820785)
chr1 (19-227)||(51820836-51821040)
chr1 (269-393)||(51860647-51860771)
chr1 (16-176)||(51860853-51861013)
chr1 (291-355)||(51376323-51376386)
chr1 (252-306)||(49809012-49809066)
chr1 (258-370)||(51755936-51756048)
chr1 (279-330)||(51379822-51379873)
chr1 (35-90)||(49808913-49808968)
chr1 (335-396)||(49809068-49809128)
[»] scaffold0710 (2 HSPs)
scaffold0710 (269-393)||(4606-4730)
scaffold0710 (16-176)||(4812-4972)
[»] chr4 (2 HSPs)
chr4 (257-341)||(40633373-40633457)
chr4 (101-166)||(40633634-40633699)


Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 51850580 - 51850197
Alignment:
Q  13 aatatgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51850580 aatatgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgat 51850481  T
Q  113 cctgctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataattgatccttcgttaatacctatgaagttgtgatcta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51850480 cctgctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataatcgatccttcgttaatacctatgaagttgtgatcta 51850381  T
Q  213 aacgcataacaataagaataacgtcacttagaaagtagcatagcatacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcatt 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51850380 aacacataacaataagaataacgtcacttagaaagtagcatagcatacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcatt 51850281  T
Q  313 ttcccctatccctttgaacaatggctccattagatacaacaaagataccagtgtcaaagcaagaccaactttcaaagaatggac 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51850280 ttcccctatccctttgaacaatggctccattagatacaacaaagatacaagtgtcaaagcaagaccaactttcaaagaatggac 51850197  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 51820785 - 51820648
Alignment:
Q  258 tacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaaga 357  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| || ||||||||||||| ||||||    
T  51820785 tacctacagtgaactccatgaccacaaccacagtcatgacagcccacatagcatttgatcctatccctttgaacaaaggttccattagatacagcaaaga 51820686  T
Q  358 taccagtgtcaaagcaagaccaactttcaaagaatgga 395  Q
    ||| ||||  ||||||||||||||||||| ||||||||    
T  51820685 tactagtgctaaagcaagaccaactttcagagaatgga 51820648  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 51821040 - 51820836
Alignment:
Q  19 cttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgatcctgct 118  Q
    ||||||||||| |||||| |||||||| |||||||||||  ||||||||||  ||||   |||||||||||||  |||||| ||||||||  ||||||||    
T  51821040 cttacctaaaagaaaaaccgcagcaccaatgaaaattgctcgaaaaatctgatcagggttatctgcaagatactcaataaaaaatgccaacaatcctgct 51820941  T
Q  119 aacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataattgatccttcgttaatacctatgaagttgtgatctaaacgca 218  Q
    ||| |||||||||||||||| ||||||||||||| ||| || || ||| ||||||||| ||||||    |||||||||||||  ||||||| ||||| ||    
T  51820940 aacgaagttcccaatcctctgtttagtcctttgcttaaagtccctcctgcaatcataactgatcc----ttaatacctatgagattgtgatataaacaca 51820845  T
Q  219 taacaataa 227  Q
    |||||||||    
T  51820844 taacaataa 51820836  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 51860771 - 51860647
Alignment:
Q  269 aactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaagataccagtgtca 368  Q
    ||||||||||||||||||||||||||||||||    | ||||||||  |||||||||||| ||||||| ||||||||||||||||| || || |||||||    
T  51860771 aactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatgaaacaagtgtca 51860672  T
Q  369 aagcaagaccaactttcaaagaatg 393  Q
    |||| | |||||||||||| |||||    
T  51860671 aagctaaaccaactttcaatgaatg 51860647  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 51861013 - 51860853
Alignment:
Q  16 atgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgatcct 115  Q
    |||||||||||||| ||||||||||||||| ||||| | |||  |||||||  | |||||  ||||||||||||||  ||| || ||||||||  ||||     
T  51861013 atgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatccc 51860914  T
Q  116 gctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataa 176  Q
    ||| |||  || || ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  51860913 gctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgcaatcataa 51860853  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 51376323 - 51376386
Alignment:
Q  291 tcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaa 355  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  51376323 tcatgacagcccacctagcattttccc-tatcccattgaacaatggctccattagatacaacaaa 51376386  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 49809012 - 49809066
Alignment:
Q  252 atagcatacctgcagtgaactccatgaccacaaccacagtcatgacagcccacat 306  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  49809012 atagcatacctgcagtgaactccatgactacaaccacagtcatgacagcctacat 49809066  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 370
Target Start/End: Original strand, 51755936 - 51756048
Alignment:
Q  258 tacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaaga 357  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||   || | |||| |  || ||| ||||||||||||||||||| ||||||||||| ||    
T  51755936 tacctacagtaaactccatgacaacaaccacagtcatgacagcaaccacaacattctttcccatcactttgaacaatggctccataagatacaacaagga 51756035  T
Q  358 taccagtgtcaaa 370  Q
     || |||||||||    
T  51756036 aacaagtgtcaaa 51756048  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 51379822 - 51379873
Alignment:
Q  279 ccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaa 330  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||||||||    
T  51379822 ccacaactacagtcatgacagcccacatggcatttttcccaatccctttgaa 51379873  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 49808913 - 49808968
Alignment:
Q  35 actgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagata 90  Q
    ||||||||| | |||||||||||   ||||||||| ||||||||||||||||||||    
T  49808913 actgcagcaacaatgaaaattgctctaaaaatctgtccaggaacatctgcaagata 49808968  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 49809068 - 49809128
Alignment:
Q  335 ggctccattagatacaacaaagataccagtgtcaaagcaagaccaactttcaaagaatggac 396  Q
    |||||| ||||||||||||||  ||| | ||||||| | |||||||||||||||||||||||    
T  49809068 ggctcctttagatacaacaaaagtacaa-tgtcaaacccagaccaactttcaaagaatggac 49809128  T

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Target: scaffold0710 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 4730 - 4606
Alignment:
Q  269 aactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaagataccagtgtca 368  Q
    ||||||||||||||||||||||||||||||||    | ||||||||  |||||||||||| ||||||| ||||||||||||||||| || || |||||||    
T  4730 aactccatgaccacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatgaaacaagtgtca 4631  T
Q  369 aagcaagaccaactttcaaagaatg 393  Q
    |||| | |||||||||||| |||||    
T  4630 aagctaaaccaactttcaatgaatg 4606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 4972 - 4812
Alignment:
Q  16 atgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgatcct 115  Q
    |||||||||||||| ||||||||||||||| ||||| | |||  |||||||  | |||||  ||||||||||||||  ||| || ||||||||  ||||     
T  4972 atgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatccc 4873  T
Q  116 gctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataa 176  Q
    ||| |||  || || ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  4872 gctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgcaatcataa 4812  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 40633457 - 40633373
Alignment:
Q  257 atacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctcca 341  Q
    ||||||||||||||||| |  ||||| || ||||||||||||||||| ||||||||||  || |||||||| || | ||||||||    
T  40633457 atacctgcagtgaactcgaaaaccaccacgacagtcatgacagcccaaatagcattttggccaatccctttaaagagtggctcca 40633373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 40633699 - 40633634
Alignment:
Q  101 aatgccaatgatcctgctaacaaagttcccaatcctctatttagtcctttgcataaggttccccct 166  Q
    ||||||||| |||||||||| || || |||||||||||||| || ||||||||||| ||| |||||    
T  40633699 aatgccaataatcctgctaataatgtccccaatcctctattcagccctttgcataaagttgcccct 40633634  T

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