View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_high_7 (Length: 306)
Name: NF18009_high_7
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 28536923 - 28537185
Alignment:
| Q |
1 |
atgaaattatcacaggttcaaacctttttcgtgtatagacgtccaaactctttttacacaatgtcctacatgatgcaactattgatttgtttaaggttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536923 |
atgaaattatcacaggttcaaacctttttcgtgtatagacgtccaaactctttttacacaatgtcctacatgatgcaactattgatttgtttaaggttga |
28537022 |
T |
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| Q |
101 |
aaaacctcaaacatgtttggtcccaatgaaattgagattgaccaatgtcaattcaattgctacaataatatatcctaactcaaaaaggaatatgaaacat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28537023 |
aaaacctcaaacatgtttggtcccaa-------------------tgtcaattcaattgctacaataatatatcctaactcaaaaaggaatgtgaaacat |
28537103 |
T |
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| Q |
201 |
aagggccataatggaccctctcacatgaaaagcatgaaaggaaacaataaattgatatctactatagttattatgagaaata |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28537104 |
aagggccataatggaccctctcacatgaaaagcatgaaaggaaacaataaattgatatctactatagttattatgagaaata |
28537185 |
T |
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