View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18009_high_8 (Length: 298)

Name: NF18009_high_8
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18009_high_8
NF18009_high_8
[»] chr1 (4 HSPs)
chr1 (16-294)||(12772881-12773159)
chr1 (208-298)||(24600377-24600467)
chr1 (208-298)||(1188651-1188741)
chr1 (208-271)||(24448309-24448372)
[»] chr2 (8 HSPs)
chr2 (208-272)||(33561514-33561578)
chr2 (208-273)||(2336654-2336719)
chr2 (208-272)||(29873600-29873664)
chr2 (208-298)||(962603-962693)
chr2 (204-298)||(41283534-41283628)
chr2 (227-272)||(41678449-41678494)
chr2 (208-272)||(29874086-29874150)
chr2 (208-272)||(30323495-30323559)
[»] chr4 (7 HSPs)
chr4 (204-272)||(28034260-28034328)
chr4 (208-278)||(34544131-34544201)
chr4 (208-272)||(15841429-15841493)
chr4 (208-298)||(760194-760284)
chr4 (208-298)||(36629242-36629332)
chr4 (208-297)||(51768121-51768210)
chr4 (136-172)||(51318464-51318500)
[»] chr8 (4 HSPs)
chr8 (208-298)||(34218800-34218890)
chr8 (214-297)||(4154350-4154432)
chr8 (227-298)||(40991758-40991829)
chr8 (220-298)||(4154741-4154819)
[»] chr5 (4 HSPs)
chr5 (208-298)||(31509628-31509718)
chr5 (208-272)||(31509762-31509826)
chr5 (211-251)||(6557113-6557153)
chr5 (208-248)||(34103609-34103649)
[»] chr6 (6 HSPs)
chr6 (208-292)||(12092545-12092629)
chr6 (208-298)||(6071137-6071227)
chr6 (207-273)||(34661671-34661737)
chr6 (208-248)||(20117209-20117249)
chr6 (208-298)||(10074426-10074516)
chr6 (208-269)||(8481960-8482021)
[»] scaffold0807 (1 HSPs)
scaffold0807 (209-273)||(3108-3172)
[»] chr3 (4 HSPs)
chr3 (230-298)||(36986033-36986101)
chr3 (230-298)||(37011472-37011540)
chr3 (208-298)||(39336292-39336382)
chr3 (208-272)||(47964581-47964645)
[»] chr7 (1 HSPs)
chr7 (208-249)||(34218097-34218138)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 12773159 - 12772881
Alignment:
Q  16 attataatgtaaaatttattacaatatcttttgtgagttacttatgttgggaagtccgaggagttacatgagcgccaatgagttaaacgtccaggattca 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  12773159 attataatgtaaaatttattacagtatcttttgtgagttacttacgttgggaagttcgaggagttacatgagcgccaatgagttaaacatccaggattca 12773060  T
Q  116 taagagacttagggtgtgtatgatccgcaaaacagtaagtactagacagaacaacactgcacaaggcaaaacaattaaaacgctctccacctaaaacctt 215  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12773059 taagagacttagggtgtgtttgatccgcaaaatggtaagtactagacagaacaacactgcacaaggcaaaacaattaaaacgctctccacctaaaacctt 12772960  T
Q  216 aagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactc 294  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||| | ||||||||| |||||||||||||||||||    
T  12772959 aagacaatgaatttatggattctctcacttataaagcgttcaacctcaagttttctaattgatattggacatctaactc 12772881  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 24600377 - 24600467
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    |||||||||||||||||| |||||||||||||| ||||||||   ||| |||||  |||||||||  |||||| |||||| ||||||||||    
T  24600377 aaaaccttaagacaatgagtttatgagttctcttacttataatatgttcaacctttacttttctatccgatatgggacatataactcacac 24600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 1188651 - 1188741
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||  |||||| |||||||||  |||||||||||||   || ||||||||||||||||  |||||| | |||| ||||||||||    
T  1188651 aaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccacttttctatccgatatggaacatataactcacac 1188741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 24448372 - 24448309
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttct 271  Q
    |||| ||||||||||||| ||||||||  ||||||||||||||  ||| ||| |||||||||||    
T  24448372 aaaatcttaagacaatgagtttatgagccctctcacttataaaatgttcaacttccacttttct 24448309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 33561514 - 33561578
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    |||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||    
T  33561514 aaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccacttttcta 33561578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 2336719 - 2336654
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaa 273  Q
    |||| |||||| || |||||||||| || ||||||||||||||| ||| |||||||||||||||||    
T  2336719 aaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaa 2336654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 29873600 - 29873664
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||||||| |||||| ||||||||| ||| ||||||||||  ||| ||||||||||||||||    
T  29873600 aaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccacttttcta 29873664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 962693 - 962603
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    |||||||||||||||||  |||||| || ||||||||||||| | ||| |||||  |||||||||  |||| | |||||| ||||||||||    
T  962693 aaaaccttaagacaatgggtttatgggtcctctcacttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacac 962603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 298
Target Start/End: Original strand, 41283534 - 41283628
Alignment:
Q  204 acctaaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||||||| |||||| |||||| || |||| |||||||| | ||| |||||  ||| || ||  |||||| |||||| ||||||||||    
T  41283534 acctaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatatgggacatataactcacac 41283628  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 41678449 - 41678494
Alignment:
Q  227 tttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    |||||| || ||||||||||||||| ||||||||||| ||||||||    
T  41678449 tttatgggtcctctcacttataaagtgtttaacctccccttttcta 41678494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 29874086 - 29874150
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||||||| |||||  |||||| || ||| || |||||||| ||| ||||||||||||||||    
T  29874086 aaaaccttaaggcaatgggtttatgggtcctcccaattataaagtgttcaacctccacttttcta 29874150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 30323559 - 30323495
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||||||| |||||| |||||  || ||||||||| ||||| ||| |||||||| |||||||    
T  30323559 aaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttcta 30323495  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 28034328 - 28034260
Alignment:
Q  204 acctaaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||||||||||  |||| | |||||| |||||||||||||||||| ||| ||||||||||||||||    
T  28034328 acctaaaaccttaaagcaataagtttatgggttctctcacttataaagtgttcaacctccacttttcta 28034260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 34544201 - 34544131
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgat 278  Q
    ||||||||||| |||||| |||||| || |||||| |||||||| | | |||||||||||||||| |||||    
T  34544201 aaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccacttttctattcgat 34544131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 15841429 - 15841493
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||||||| |||||  ||||||| | |||||||||| |||| ||| ||||||||||||||||    
T  15841429 aaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttcaacctccacttttcta 15841493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 760284 - 760194
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    |||| |||||| |||||| |||||| || |||||||||||||||   | ||||| || ||||||| ||||| | |||||| ||||||||||    
T  760284 aaaatcttaaggcaatgagtttatgggtcctctcacttataaagttctcaaccttcatttttctattcgatgtgggacatataactcacac 760194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 36629332 - 36629242
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||| |||||| |||||| || |||| |||||||| | ||||||| |  |||||||||  |||| | |||||| ||||||||||    
T  36629332 aaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgtttaacttttacttttctatccgatgtgggacatataactcacac 36629242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 51768121 - 51768210
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcaca 297  Q
    |||||||||||||||||| ||||||||| |||| | |||||| | ||| ||| |  ||| || || ||||||| |||||| |||||||||    
T  51768121 aaaaccttaagacaatgagtttatgagtcctcttatttataaggtgttcaacatttactcttatattcgatataggacatataactcaca 51768210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 51318464 - 51318500
Alignment:
Q  136 tgatccgcaaaacagtaagtactagacagaacaacac 172  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  51318464 tgatccgcaaaacagaaagtactagacagaccaacac 51318500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 34218800 - 34218890
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||| ||||||||||||||||||| ||| |||| |||||| |  ||| ||| |||||||||||||| |||||  ||| ||||||||||||    
T  34218800 aaaactttaagacaatgaatttatgtgttatctctcttatataatgttcaacatccacttttctaatagatatgagacttctaactcacac 34218890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 4154350 - 4154432
Alignment:
Q  214 ttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcaca 297  Q
    ||||| |||||| |||||| || ||||||||||||||| ||| ||||||||||||||||   ||| | |||||| |||||||||    
T  4154350 ttaaggcaatgagtttatgggt-ctctcacttataaagtgttcaacctccacttttctatctgatgtaggacatataactcaca 4154432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 40991829 - 40991758
Alignment:
Q  227 tttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    |||||| || ||||||||||| ||| ||| ||||||||||||||||| | || | |||| ||||||||||||    
T  40991829 tttatgggtcctctcacttatgaagtgttcaacctccacttttctaagcaatgtgggacttctaactcacac 40991758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 4154741 - 4154819
Alignment:
Q  220 caatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    |||||| |||||| || || |||||||||||| ||| ||||||||||||||||   ||| | |||||| ||||||||||    
T  4154741 caatgagtttatgggtcctttcacttataaagtgttcaacctccacttttctatcagatgtgggacatataactcacac 4154819  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 31509718 - 31509628
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||| ||| |||||| ||||||||| ||||||||||||||| | | ||||||||||||||||  |||| |  ||||| ||||||||||    
T  31509718 aaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttttctatccgatgtgagacatataactcacac 31509628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 31509826 - 31509762
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||| ||| |||||| ||||||||| ||||||||||||||| | | ||||||||||||||||    
T  31509826 aaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttttcta 31509762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 6557113 - 6557153
Alignment:
Q  211 accttaagacaatgaatttatgagttctctcacttataaag 251  Q
    ||||| ||||||||||||||||||||||||| ||| |||||    
T  6557113 accttgagacaatgaatttatgagttctctcgcttgtaaag 6557153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 34103649 - 34103609
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttata 248  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  34103649 aaaaccttaaggcaatgagtttatgagttctctctcttata 34103609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 12092545 - 12092629
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaac 292  Q
    ||||||||||| |||||| ||||||  | ||||||||||||||| | | ||||||||||||||||  |||| | |||||||||||    
T  12092545 aaaaccttaaggcaatgagtttatggatcctctcacttataaagtgctcaacctccacttttctatccgatgtgggacatctaac 12092629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 6071227 - 6071137
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    |||| |||||| |||||| ||||||  |  |||||||||||||| ||| |||||||||||||||| || || | |||||| ||||||||||    
T  6071227 aaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccacttttctattcaatgtgggacatataactcacac 6071137  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 34661671 - 34661737
Alignment:
Q  207 taaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaa 273  Q
    |||||||||||||||||  || |||| ||||||| |||||||||| | | |||||||||||||||||    
T  34661671 taaaaccttaagacaatatatgtatgggttctcttacttataaagtgatcaacctccacttttctaa 34661737  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 20117249 - 20117209
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttata 248  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  20117249 aaaaccttaagacattgaatttatgagtactctcacttata 20117209  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 10074426 - 10074516
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||| |||||| |||||| || |||| |||||||| | ||| |||||  |||||||||  |||| | |||| ||||||||||||    
T  10074426 aaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgggacctctaactcacac 10074516  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 8482021 - 8481960
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccactttt 269  Q
    |||| |||||| |||||| |||||||||  ||||| |||||||| ||| |||||||||||||    
T  8482021 aaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactttt 8481960  T

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Target: scaffold0807 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 3172 - 3108
Alignment:
Q  209 aaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaa 273  Q
    |||||||||| |||||| |||||   | ||||||||||||||| || ||||||||||||||||||    
T  3172 aaaccttaaggcaatgagtttattgatgctctcacttataaagtgtataacctccacttttctaa 3108  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 36986033 - 36986101
Alignment:
Q  230 atgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||||||||||||||   | ||||| |||||||||| ||||| | |||||| ||||||||||    
T  36986033 atgagttctctcacttataaagttctcaaccttcacttttctattcgatgtgggacatataactcacac 36986101  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 37011472 - 37011540
Alignment:
Q  230 atgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||||||||||||||   | ||||| |||||||||| ||||| | |||||| ||||||||||    
T  37011472 atgagttctctcacttataaagttctcaaccttcacttttctattcgatgtgggacatataactcacac 37011540  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 39336292 - 39336382
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttctaatcgatattggacatctaactcacac 298  Q
    ||||||||||  |||||| ||||||  | ||||||||||||||| ||| ||||||||  ||||||  |||| | |||||| ||||||||||    
T  39336292 aaaaccttaaagcaatgagtttatggatcctctcacttataaagtgttcaacctccaactttctatccgatgtgggacatataactcacac 39336382  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 47964581 - 47964645
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataaagcgtttaacctccacttttcta 272  Q
    ||||||||||| ||||   |||||| || |||||||||||| |||||| ||||||||| ||||||    
T  47964581 aaaaccttaaggcaataggtttatgggtcctctcacttatatagcgttcaacctccacatttcta 47964645  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 34218097 - 34218138
Alignment:
Q  208 aaaaccttaagacaatgaatttatgagttctctcacttataa 249  Q
    |||||||||||||||||  ||||||||| |||||||||||||    
T  34218097 aaaaccttaagacaatgggtttatgagtcctctcacttataa 34218138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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