View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_low_1 (Length: 587)
Name: NF18009_low_1
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 32 - 501
Target Start/End: Complemental strand, 28536849 - 28536380
Alignment:
| Q |
32 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatataggaatttggtttgaatattcatatggaatttcaaag |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28536849 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatacaggaatttggtttgaatattcatatggaatttcaaag |
28536750 |
T |
|
| Q |
132 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatcgagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536749 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatccagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
28536650 |
T |
|
| Q |
232 |
tttatttgacaagcttgaatatgtttcattgtgttgaggagaatgaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgctttct |
331 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28536649 |
tttatttgacaagcttgaatatgttttattgtgttgaggagaatgaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgcgttct |
28536550 |
T |
|
| Q |
332 |
tcgcacgctcaacctcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactg |
431 |
Q |
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| T |
28536549 |
tcgcacgctcaacgtcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactg |
28536450 |
T |
|
| Q |
432 |
atgaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
501 |
Q |
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| T |
28536449 |
atgaaatgaattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
28536380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28536930 - 28536833
Alignment:
| Q |
1 |
aatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatatagga |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
28536930 |
aatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattctgttttcaccttttattttttcatcaatgattaatatacagga |
28536833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 501 - 558
Target Start/End: Complemental strand, 28536317 - 28536260
Alignment:
| Q |
501 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgt |
558 |
Q |
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| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgt |
28536260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 480
Target Start/End: Original strand, 54492156 - 54492190
Alignment:
| Q |
446 |
ctcatgtgtaatttacacatgagaaggtaaagtgt |
480 |
Q |
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| T |
54492156 |
ctcatgtgtaattttcacatgagaaggtaaagtgt |
54492190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 17429155 - 17429217
Alignment:
| Q |
434 |
gaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
496 |
Q |
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||||||||||| |||||||||||||||| ||||||| |||||||| |||| | |||||||| |
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| T |
17429155 |
gaaatggattctctcatgtgtaatttactcatgagatactaaagtgtgatctcttaccattca |
17429217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 42971534 - 42971584
Alignment:
| Q |
446 |
ctcatgtgtaatttacacatgaga-aggtaaagtgtcatctttcaccattc |
495 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
42971534 |
ctcatgtgtaatttttacatgagagaggtaaagtgtcatctctcaccattc |
42971584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 496
Target Start/End: Original strand, 49655326 - 49655370
Alignment:
| Q |
452 |
tgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
496 |
Q |
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|||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
49655326 |
tgtaatttacacataagagagtaaagtgtcatctctcaccattca |
49655370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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