View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_low_2 (Length: 579)
Name: NF18009_low_2
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Original strand, 48085009 - 48085539
Alignment:
| Q |
16 |
cacatggattacattaccaaccctcaagcttatggtatgtagtagtgtaatgcaatattcatattcctttaaattgtttgactttgaccaactctatcta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085009 |
cacatggattacattaccaaccctcaagcttatggtatgtagtagtgtaatgccatattcatattcctttaaattgtttgactttgaccaactctatcta |
48085108 |
T |
|
| Q |
116 |
tatatgttatgtattgaattgggctt-gacaggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacacca |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085109 |
tatatgttatgtattgaattgggctttgacaggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacacca |
48085208 |
T |
|
| Q |
215 |
gcctcaaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtcaaccaaatccttaggg |
314 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48085209 |
gcctcaaacttgtgcccaaacagagaacttaatgctttttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtcaaccgaatccttaggg |
48085308 |
T |
|
| Q |
315 |
gcagtgctcagtacatgtatcccatgaatctcagcactatcatggccttagattccaggacttgatcaatccatccaagacatttggttaatgnnnnnnn |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085309 |
gcagtgctcagtacatgtatcccatgaatctcagcactatcatggccttagattccaggacttgatcaatccatccaagacatttggttaatgttttttt |
48085408 |
T |
|
| Q |
415 |
gttagtttatgtgtgtattttctttatctgtgtccctttaatttatccattaatcttttgttttgtattccatagctagtggtttgtcatgccaagttct |
514 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085409 |
gttagtttatgtgtgtattttctttatctgtgtc--------------------cttttgttttgtattccatagctagtggtttgtcatgccaagttct |
48085488 |
T |
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| Q |
515 |
tgagtactggttttcccactcaaattgtcagtaataaaatgtcttcctttg |
565 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085489 |
tgagtactggttttcccactcaaattgtcagtaataaaatgtcttcctttg |
48085539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 48102491 - 48102536
Alignment:
| Q |
246 |
atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48102491 |
atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat |
48102536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 1809526 - 1809590
Alignment:
| Q |
221 |
aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaa |
285 |
Q |
| |
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| T |
1809526 |
aacttgtgccctaacagagacttgtatgtattttgggatccattccatccatctgaaaaggcaaa |
1809590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 48078011 - 48078106
Alignment:
| Q |
145 |
aggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagaga |
240 |
Q |
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||||||||| |||||||| || ||||| ||||| ||||| || |||||||| |||| || ||||| ||||| || ||| | |||||||||||||| |
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| T |
48078011 |
aggatttgccacatcaaaagttgcatgttgtggtcaaggaccctacaatgggattggactatgtactccagcatccaacatatgcccaaacagaga |
48078106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 287
Target Start/End: Original strand, 48093140 - 48093283
Alignment:
| Q |
144 |
caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaact |
243 |
Q |
| |
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||||||||| |||||| || ||||||| ||||| ||||| || ||||||||||||||||| || |||||| || || || ||||| ||| | || |
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| T |
48093140 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggctatgcacaccactatctaatttatgccctaaccgtgacga |
48093239 |
T |
|
| Q |
244 |
taatgcattttgggatgcattccatccatctgaaaaggcaaaca |
287 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||| |||| |
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| T |
48093240 |
atatgcattttgggatgcatttcatccttcagaaaaggctaaca |
48093283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 13324666 - 13324606
Alignment:
| Q |
144 |
caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggct |
204 |
Q |
| |
|
||||||||| |||||| || ||||||| ||||| ||||| || ||||||||||||||||| |
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| T |
13324666 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggct |
13324606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 143 - 297
Target Start/End: Complemental strand, 35376421 - 35376267
Alignment:
| Q |
143 |
acaggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaac |
242 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||||||||||| || |||||||| |||| || || ||||| ||||||||||||| ||| |||| | |
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| T |
35376421 |
acaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagacc |
35376322 |
T |
|
| Q |
243 |
ttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagt |
297 |
Q |
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|| |||||||||||||| ||||||||||||||||||| || | || ||||||||| |
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| T |
35376321 |
tttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagt |
35376267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 35357791 - 35357711
Alignment:
| Q |
218 |
tcaaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtc |
298 |
Q |
| |
|
||||| ||||||||||| || | ||| ||||||||||||||||||| |||||||||||||| || | || |||||||||| |
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| T |
35357791 |
tcaaaattgtgcccaaatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtc |
35357711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 35364581 - 35364521
Alignment:
| Q |
219 |
caaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaa |
279 |
Q |
| |
|
|||||||||||| ||| |||| || |||||||||||||| || |||||||||||||||| |
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|
| T |
35364581 |
caaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaa |
35364521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 7385635 - 7385568
Alignment:
| Q |
221 |
aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaa |
288 |
Q |
| |
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||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7385635 |
aacttgtgctcaaatagagacttaaatgcattttgggatgcattccatccatctgaaaaggcaaacaa |
7385568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 6339282 - 6339168
Alignment:
| Q |
144 |
caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaact |
243 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||| ||||| |||| ||||||| |||| || ||||| ||||| || ||||||||||| || || || || |
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| T |
6339282 |
caggatttgaaacatcaaaacaagcatgttgtggtcaaggaccattcaatggagttggactatgtactccagcttctaacttgtgccctaatagggatct |
6339183 |
T |
|
| Q |
244 |
taatgcattttggga |
258 |
Q |
| |
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| ||||||||||||| |
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|
| T |
6339182 |
ttatgcattttggga |
6339168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 5666539 - 5666479
Alignment:
| Q |
144 |
caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggct |
204 |
Q |
| |
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||||||||| |||||| || ||||||| ||||| ||||| || ||||||||||||||||| |
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|
| T |
5666539 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggct |
5666479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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