View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18009_low_5 (Length: 419)
Name: NF18009_low_5
Description: NF18009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18009_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 36852932 - 36852535
Alignment:
| Q |
18 |
aaatatattactaaaagataaatgttaccacaccagcacaaaaagcaaagcataaagcatttataaaattgggctacatttggattgacttatgaacatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36852932 |
aaatatattactaaaagataaatgttaccacaccagcacaaaaagtaaagcataaagcatttataaaattgggctacatttggattgacttatgaacatg |
36852833 |
T |
|
| Q |
118 |
ggcttatctgtcataagtacttaataacattgtgtttgagggagttcatgtaaacatcttccgacatgtccatagctatttttagctaatttcaataagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36852832 |
ggcttatctgtcataagtacttaataacattgtgtttgagggagttcatgtaaacatcttccgacatgtccatagctagttttagctaatttcaataagc |
36852733 |
T |
|
| Q |
218 |
ttttcataatagcttaagaaaacggcgtataacttacatgaaatcaatttaaccatactttctctccgaatatataattagctcaaatataagtgcttaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36852732 |
ttttcataatagcttaagaaaacggcgtataacttacatgaaatcaatttaaccatactttctctccgaatatataattagctcaaatataagtgcttaa |
36852633 |
T |
|
| Q |
318 |
atgataaatgcttttcctctaaggattagttgagtagtttatccaaacagtgaattgatcactacccacatgcatttctttccaaccctttgcttctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36852632 |
atgataaatgcttttcctctaaggattagttgagttgtttatccaaacagtgaattgatcactacccacatgcatttctttccaacccttttcttctc |
36852535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 30533831 - 30533777
Alignment:
| Q |
206 |
atttcaataagcttttcataatagcttaagaaaacggcgtataacttacatgaaa |
260 |
Q |
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|||| |||||||| |||||||||||||| |||||| || ||||||||| |||||| |
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| T |
30533831 |
atttgaataagctcttcataatagcttatgaaaactgcttataacttatatgaaa |
30533777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 41957499 - 41957543
Alignment:
| Q |
226 |
atagcttaagaaaacggcgtataacttacatgaaatcaatttaac |
270 |
Q |
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|||||||| |||||| || |||||||||||||||| ||||||||| |
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| T |
41957499 |
atagcttatgaaaacagcttataacttacatgaaaacaatttaac |
41957543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 1217848 - 1217892
Alignment:
| Q |
226 |
atagcttaagaaaacggcgtataacttacatgaaatcaatttaac |
270 |
Q |
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|||||||| |||||| || |||||||||||||||| ||||||||| |
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| T |
1217848 |
atagcttatgaaaacagcttataacttacatgaaaacaatttaac |
1217892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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