View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1800_high_2 (Length: 390)
Name: NF1800_high_2
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 33 - 377
Target Start/End: Complemental strand, 8852938 - 8852594
Alignment:
| Q |
33 |
ggaccctttctccggaaccaaagagttaagacaaaaaacaatgggtaaaaacttttttnnnnnnngtattagcctctaactcctggtccaataaacattg |
132 |
Q |
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| T |
8852938 |
ggaccctttctccggaaccaaagagttaagacaaaaaacaatgtgtaaaaacttttttaaaaaaagtattagcctctaactcctggtccaataaacattg |
8852839 |
T |
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| Q |
133 |
gatacacaacataatgtatcagtttacattagagggatgaagtttgtcttttnnnnnnnnnnnnnnnnnnccctgtaaactacttttatgacaaaatttt |
232 |
Q |
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| T |
8852838 |
aatacacaacataatatctcagtttacattagagggatgaagtttgtcttttaaaaagaaaaaacaaaaaccctgtaaactacttttatgacaaaatttt |
8852739 |
T |
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| Q |
233 |
gttaaatttcctccacctaactttttatgactattggacttatagattcaaatgttgaataatgtgatattaacaatgttgagattccacatcaactaga |
332 |
Q |
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| T |
8852738 |
gttaaatttcctccacctaactttttatgactattggacttatagattcaaatgttgaataatgtgatattaacaatgttgagattccacatcaactaga |
8852639 |
T |
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| Q |
333 |
gatatgtctaatgtagcccttgtacactttggcaactcccaccct |
377 |
Q |
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| T |
8852638 |
gatgtgtctaatgtagcccttatacactttggcaactcccaccct |
8852594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 23201108 - 23201047
Alignment:
| Q |
123 |
ataaacattggatacacaacataatgtatcagtttacattagagggatgaagtttgtctttt |
184 |
Q |
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| T |
23201108 |
ataaacattggatagacaacataatgtagcagtttacattacagggacgaagcttgtctttt |
23201047 |
T |
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