View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1800_high_4 (Length: 364)
Name: NF1800_high_4
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 37577250 - 37577324
Alignment:
| Q |
98 |
ttattttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttcaattgccataaaaag |
174 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
37577250 |
ttattttctttt--gttttgaatttatactctagcatttaatctcaaattcatcagtttttcaaatgccaaaaaaag |
37577324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 7969873 - 7969774
Alignment:
| Q |
83 |
ccaattgaagtcgtgttattttcttttatgtttggaatttatactctagcatttaatt----tcaaattcatcagtttttcaattgccataaaaaggttg |
178 |
Q |
| |
|
|||||||||||| | ||||| ||||| |||||| |||||||||| ||||||||| ||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
7969873 |
ccaattgaagtcttattattatctttaatgttttgaatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccaaaaaaaggttg |
7969774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 32894926 - 32894972
Alignment:
| Q |
241 |
gatcacgaatttcttttgccttgttgtgctgtaataaagattgcaac |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32894926 |
gatcacaaatttcttttgccttgttgtgctgtaataaagattgcaac |
32894972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 32557820 - 32557756
Alignment:
| Q |
103 |
ttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttcaattgcca |
167 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
32557820 |
ttcttttatgtttcgaatatatactctagcattttatctcaaattcatcagtttttcaaatgcca |
32557756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 28474999 - 28475070
Alignment:
| Q |
96 |
tgttattttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttcaattgcca |
167 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||| || ||||| |
|
|
| T |
28474999 |
tgttattttcttttctgttttgaatttatactatagcattttatctcaaattcatcagtttttgaaatgcca |
28475070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 32656022 - 32655939
Alignment:
| Q |
98 |
ttattttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttcaattgccataaaaaggttgttag |
182 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| || | ||||||| ||||||||||| ||| | ||| |||||||||| |
|
|
| T |
32656022 |
ttattttcttttatgttttgaatttatactccggcattatatctgaaattcaacagtttttcaaatgcga-aaataggttgttag |
32655939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 32858615 - 32858660
Alignment:
| Q |
241 |
gatcacgaatttcttttgccttgttgtgctgtaataaagattgcaa |
286 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
32858615 |
gatcatgaatttcttttgccttgttgagctgtagtaaaggttgcaa |
32858660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 32651751 - 32651673
Alignment:
| Q |
101 |
ttttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttcaattgccataaaaaggttgtta |
181 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| ||| || | |||||||||| |||||||| ||| | ||||||||||||| |
|
|
| T |
32651751 |
ttttcctttatgttttgaatttatactctagtgttt-atctgaaattcatcattttttcaactgcga-aaaaaggttgtta |
32651673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 32763119 - 32763195
Alignment:
| Q |
83 |
ccaattgaagtcgtgttattttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttcaat |
162 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||| ||||||||| |||| ||| || |||||||||||||| ||||||| |
|
|
| T |
32763119 |
ccaattaaagtcttgttattttc-tttatgttttgaatttata--ctagtgttttatctcaaattcatcagtgtttcaat |
32763195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 16757127 - 16757188
Alignment:
| Q |
98 |
ttattttcttttatgtttggaatttatactctagcatttaatttcaaattcatcagtttttc |
159 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
16757127 |
ttattatcttttatgttttgaatttatactctagcaatttatttcaaattcatcattttttc |
16757188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University