View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1800_low_1 (Length: 441)
Name: NF1800_low_1
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 49145060 - 49145484
Alignment:
| Q |
1 |
attatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49145060 |
attatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaat |
49145159 |
T |
|
| Q |
101 |
gatatctcgttcttctatagagatgaattggttgtatggtattctaaacaaaagatggcacccttttcaatttcaggtatgccatgctaataatagtaaa |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49145160 |
gatatctcgttcttctacagagaagaattggttgtatggtattctaaacaaaagatggcacccttttcaatttcagttatgccatgctaataatagtaaa |
49145259 |
T |
|
| Q |
201 |
ctttcgctctgtggctctagtcatggttggtttgcatttgtagatgattccaagtccattataaccctaatgagtccttttaaggatacaccttgcatta |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49145260 |
ctttcgctctgtggctctagccatggttggtttgcatttgtagatgattccaagtccattataaccctaatgagtccttttaaggatacaccttgcatta |
49145359 |
T |
|
| Q |
301 |
ctctcccacccctcaattctgttaacaaggttactttatctgctgatccaatacaaagtccaaatgattatatggttgtagcaatttatgatgattgtgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49145360 |
ctctcccacccctcaattctgttaacaaggttactttatctgctgatccaatgcaaagtccaaatgattatatggttgtagcaatttatgatgattgtgg |
49145459 |
T |
|
| Q |
401 |
taatcttgcttatgttggacgaggt |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
49145460 |
taatcttgcttatgttggacgaggt |
49145484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 130 - 425
Target Start/End: Original strand, 4235623 - 4235915
Alignment:
| Q |
130 |
ggttgtatggtattctaaacaaaagatggcacccttttcaatttcaggtatgccatgctaataatagtaaactttcgctctgtggctctagtcatggttg |
229 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
4235623 |
ggttgtacggtattctaaacaaaagatggtacccttttcaatttcaggtatgccatgctaataaccctaaactttcgctttgtggctctagccatggttg |
4235722 |
T |
|
| Q |
230 |
gtttgcatttgtagatgattccaagtccattataaccctaatgagtccttttaaggatacaccttgcattactctcccacccctcaattctgttaacaag |
329 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
4235723 |
gtttgcattagtagatgattctaagtccattataaccctaatgagtccttttaaggatataccttgcgttattctcccacccctcaattctgtttacaag |
4235822 |
T |
|
| Q |
330 |
gttactttatctgctgatccaatacaaagtccaaatgattatatggttgtagcaatttatgatgattgtggtaatcttgcttatgttggacgaggt |
425 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| |
|
|
| T |
4235823 |
gttactttatccactaatccaataaaaagtccaaataattatatggttgtagcaatttatgac---tctggtaatcttgcttacattggaagaggt |
4235915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 4235470 - 4235572
Alignment:
| Q |
4 |
atgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaatgat |
103 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
4235470 |
atgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagtttaaccatcaaaatcatcaattcaaggccaacacattacccatgttaatgat |
4235569 |
T |
|
| Q |
104 |
atc |
106 |
Q |
| |
|
||| |
|
|
| T |
4235570 |
atc |
4235572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 411
Target Start/End: Original strand, 49149784 - 49149984
Alignment:
| Q |
210 |
tgtggctctagtcatggttggtttgcatttgtagatgattccaagtccattataaccctaatgagtccttttaaggatacaccttgcattactctcccac |
309 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||| |||| ||||| | |||| ||||||| |||||||||||||| |||| ||||| ||| |||| |
|
|
| T |
49149784 |
tgtggctctagccatggttggcttgcattagtagattattctaagtctaccttaacactaatgaatccttttaaggatatacctcccattattctgccac |
49149883 |
T |
|
| Q |
310 |
ccctcaattctgttaacaaggttactttatctgctgatccaatacaaagtccaaatgattatatggttgtagcaatttatgatgattgtggtaatcttgc |
409 |
Q |
| |
|
|| |||||| ||| | |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||| || || || |||||||||||| |
|
|
| T |
49149884 |
ccatcaattgggtttataaggttactttatctgctgatctaataacaagtccaaatgattatgtgg-tgtagcaatctacgacatttctggtaatcttgc |
49149982 |
T |
|
| Q |
410 |
tt |
411 |
Q |
| |
|
|| |
|
|
| T |
49149983 |
tt |
49149984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 49149610 - 49149668
Alignment:
| Q |
4 |
atgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaa |
62 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
49149610 |
atgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagcttaaccatcaa |
49149668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 35625905 - 35625806
Alignment:
| Q |
4 |
atgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaatgat |
103 |
Q |
| |
|
|||||| ||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||| || |||| || ||| |||||||||||||||||| |
|
|
| T |
35625905 |
atgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagttcagaactcatgtactacccatgctaatgat |
35625806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 28614713 - 28614765
Alignment:
| Q |
21 |
gtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaatt |
73 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||| |||||||| |
|
|
| T |
28614713 |
gtgtgcaagacttggcgatcagttgcaaagcttaaccatcaaaaccatcaatt |
28614765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 28621302 - 28621364
Alignment:
| Q |
11 |
gtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaatt |
73 |
Q |
| |
|
|||||||| |||||||| | |||||| ||| |||||||||| | |||||||||||||||||| |
|
|
| T |
28621302 |
gtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatcatcaatt |
28621364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 29269847 - 29269909
Alignment:
| Q |
11 |
gtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaatt |
73 |
Q |
| |
|
|||||||| |||||||||| ||| | ||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
29269847 |
gtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccataaaaatcatcaatt |
29269909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 28612988 - 28612936
Alignment:
| Q |
21 |
gtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaatt |
73 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||| |||||||| |||||||| |
|
|
| T |
28612988 |
gtgtgcaagacttggctatcagttgcaaagcttaaccatcaaagccatcaatt |
28612936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 29287680 - 29287772
Alignment:
| Q |
11 |
gtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaatgat |
103 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||| ||| ||| |||| ||||||||||||| | || |||| |||||| ||||| ||||| |
|
|
| T |
29287680 |
gtttggtgtggtgtgtaagaattggctatcaattgctaagcttaaccataaaaatcatcaatttaggattaatgtactacctatgcttatgat |
29287772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University