View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1800_low_11 (Length: 306)
Name: NF1800_low_11
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 23523737 - 23523864
Alignment:
| Q |
101 |
gaaatgaaacattgtttctaaactcaaagagttgctatatattccatttatttttctattataagaaaaaatcatagtgtgaaatatgaaagaatttcac |
200 |
Q |
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| T |
23523737 |
gaaatgaaacattgtttctaaactcaaagagttgttatatattccatttatttttctattataagaaaaaatcatagtgtgaaatatgaaagaatttcac |
23523836 |
T |
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| Q |
201 |
acttctattttcagtcatttttgttctc |
228 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
23523837 |
acttctattttcaatcatttttgttctc |
23523864 |
T |
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