View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1800_low_12 (Length: 302)
Name: NF1800_low_12
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 11873513 - 11873363
Alignment:
| Q |
124 |
atataaagaatgattatttgtagtcaatatatgccaaacatatnnnnnnnt-ctgaaaattatttcctcttgtatgaagaaacggattgttaatattagt |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11873513 |
atataaagaatgattacttgtagtcaatatatgccaaacatatgaaaattaactgaaaattatttcctcttgtatgaagaaacagattgttaatattagt |
11873414 |
T |
|
| Q |
223 |
caaatttattaacaatttcaagtcatgccttgaaatttgtgtcttccttca |
273 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11873413 |
caaatttattaacaatttcaagtcataccttgaaatttgtgtcttccttca |
11873363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11874064 - 11873928
Alignment:
| Q |
1 |
ccatggactgcggcatcatatcttttgatgtcatcacaatcatggttgaagctgcatcaac-----cgcatttgattgtgattcctcacaatgtcaagaa |
95 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
11874064 |
ccatggactgcagcatcatggcttttgatgtcattgcaatcatggttgaagctgcatcaactgcattgcatttgattgtgattcctcgccatgtcaagaa |
11873965 |
T |
|
| Q |
96 |
ttgtgatccaactgtgactgttaaatcaatataaaga |
132 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
11873964 |
ttgtgatccaattgcgactgttaaattaatataaaga |
11873928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 11866803 - 11866755
Alignment:
| Q |
226 |
atttattaacaatttcaagtcatgccttgaaatttgtgtcttccttcat |
274 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
11866803 |
attttttaacaatttctagccaagccttgaaatttgtgtcttccttcat |
11866755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 11878100 - 11878057
Alignment:
| Q |
207 |
gattgttaatattagtcaaatttattaacaatttcaagtcatgc |
250 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
11878100 |
gattgttaacattagttaaatttattaacaattgcaagtcatgc |
11878057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 11893107 - 11893064
Alignment:
| Q |
207 |
gattgttaatattagtcaaatttattaacaatttcaagtcatgc |
250 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
11893107 |
gattgttaacattagttaaatttattaacaattgcaagtcatgc |
11893064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 11895516 - 11895473
Alignment:
| Q |
207 |
gattgttaatattagtcaaatttattaacaatttcaagtcatgc |
250 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
11895516 |
gattgttaacattagttaaatttattaacaattgcaagtcatgc |
11895473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 4903443 - 4903491
Alignment:
| Q |
53 |
tgcatcaaccgcatttgattgtgattcctcacaatgtcaagaattgtga |
101 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4903443 |
tgcatcaaccgcaattgattgtgattctctacaatatcaagaattgtga |
4903491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University