View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1800_low_14 (Length: 280)

Name: NF1800_low_14
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1800_low_14
NF1800_low_14
[»] chr8 (17 HSPs)
chr8 (102-280)||(44548007-44548185)
chr8 (103-277)||(44547770-44547944)
chr8 (103-280)||(44547563-44547740)
chr8 (124-280)||(44547527-44547677)
chr8 (150-280)||(44547689-44547813)
chr8 (166-280)||(44547809-44547923)
chr8 (105-280)||(44547407-44547576)
chr8 (124-280)||(44547725-44547881)
chr8 (160-247)||(44547920-44548007)
chr8 (103-280)||(44547851-44548022)
chr8 (124-277)||(44547974-44548121)
chr8 (164-240)||(44547405-44547481)
chr8 (103-198)||(44547405-44547500)
chr8 (160-277)||(44548094-44548205)
chr8 (224-280)||(44548205-44548261)
chr8 (182-247)||(44548196-44548261)
chr8 (150-247)||(44548160-44548251)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 44548185 - 44548007
Alignment:
Q  102 tacccttcctagcttttgagtctgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggt 201  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44548185 tacccttcctagcttttgagtctgagaaccagtcaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggt 44548086  T
Q  202 tgagcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
    ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  44548085 tgagcctgtggagtagcaaccacccttcccagctcttgaggttgagcatgtggagaagccaccacccttcctatctctt 44548007  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 103 - 277
Target Start/End: Complemental strand, 44547944 - 44547770
Alignment:
Q  103 acccttcctagcttttgagtctgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggtt 202  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44547944 acccttcttagcttttgagtctgagaaccagccaccaccattcctagctcttgaggctgagcttgaggaccagccaccacccttcctagctcttgaggtt 44547845  T
Q  203 gagcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagct 277  Q
    |||| ||||||||| | ||||| ||| |||||||||||| |||||| || |||  ||| ||||||||||||||||    
T  44547844 gagcatgtggagcaaccaccactctttctagctcttgagcctgagcttgaggactagcaaccacccttcctagct 44547770  T

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Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 44547740 - 44547563
Alignment:
Q  103 acccttcctagcttttgagtctgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggtt 202  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |    
T  44547740 acccttcctagctcttgagtctgaggaccagccaccaccattcctagctcttgaggttgagcttgaggacccgccaccacccttcctagcttttgaggct 44547641  T
Q  203 gagcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
    |||| ||||||||||| | |||||||||||||| |||||| ||| | ||||||||||| |||| ||||||||||||||    
T  44547640 gagcatgtggagcagccatcacccttcctagcttttgaggttgatcctgtggagcagcaaccatccttcctagctctt 44547563  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 44547677 - 44547527
Alignment:
Q  124 tgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaacca 223  Q
    |||| ||| ||||||||| |||||| || |||||||||||| || ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  44547677 tgaggacccgccaccacccttcctagcttttgaggctgagcatgtggagcagccatcacccttcctagcttttgaggttgatcctgtggagcagcaacca 44547578  T
Q  224 cccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
     |||||||||||||      |||||||| ||| |||| |||||||||||||||||||    
T  44547577 tccttcctagctct------tgagcatgaggaccagctaccacccttcctagctctt 44547527  T

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Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 44547813 - 44547689
Alignment:
Q  150 ctcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttgaggctgagca 249  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||       
T  44547813 ctcttgagcctgagcttgaggactagcaaccacccttcctagcttttgaggttgagtctgtggagcaacaaccacccttcctagctcttgagtctga--- 44547717  T
Q  250 tgtggagcagccaccacccttcctagctctt 280  Q
       ||| ||||||||||| ||||||||||||    
T  44547716 ---ggaccagccaccaccattcctagctctt 44547689  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 44547923 - 44547809
Alignment:
Q  166 tgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcagccacca 265  Q
    |||| ||||||||||||| ||||||||| |||||| ||||| || ||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  44547923 tgagaaccagccaccaccattcctagctcttgaggctgagcttgaggaccagccaccacccttcctagctcttgaggttgagcatgtggagcaaccacca 44547824  T
Q  266 cccttcctagctctt 280  Q
    | ||| |||||||||    
T  44547823 ctctttctagctctt 44547809  T

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Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 280
Target Start/End: Complemental strand, 44547576 - 44547407
Alignment:
Q  105 ccttcctagcttttgagtctgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggttga 204  Q
    ||||||||||| |||||  |||| |||||| |||||| |||||| ||||||||| ||||| |||||| ||  ||||||||||||||||| ||||  ||||    
T  44547576 ccttcctagctcttgagcatgaggaccagctaccacccttcctagctcttgaggttgagcctgaggagcaatcaccacccttcctagctcttgatcttga 44547477  T
Q  205 gcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
    |      || |||| ||||||||| ||||||||||||| ||||| || ||| ||||||||||||||||||||||||    
T  44547476 g------gaccagctaccaccctttctagctcttgaggttgagcctgaggaccagccaccacccttcctagctctt 44547407  T

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Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 44547881 - 44547725
Alignment:
Q  124 tgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaacca 223  Q
    |||| ||||||||||||| |||||| ||||||||| ||||| || ||| || ||||||| ||| |||||| |||||  ||||| || |||  ||||||||    
T  44547881 tgaggaccagccaccacccttcctagctcttgaggttgagcatgtggagcaaccaccactctttctagctcttgagcctgagcttgaggactagcaacca 44547782  T
Q  224 cccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
    |||||||||||| |||||| ||||  ||||||||| | |||||||||||||||||||    
T  44547781 cccttcctagcttttgaggttgagtctgtggagcaacaaccacccttcctagctctt 44547725  T

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Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 44548007 - 44547920
Alignment:
Q  160 tgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttgaggctgag 247  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||| |||||    
T  44548007 tgagcctgaggaccagccaccacccttcctagcttttgaggttgggtctgtggagcagcaaccacccttcttagcttttgagtctgag 44547920  T

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Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 44548022 - 44547851
Alignment:
Q  103 acccttcctagcttttgagtctgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggtt 202  Q
    |||||||||| || ||||| ||||| ||||||||||||| |||||| || |||||| || |  || ||| |||| |||||||||| |||||||      |    
T  44548022 acccttcctatctcttgagcctgaggaccagccaccacccttcctagcttttgaggttgggtctgtggagcagcaaccacccttcttagcttt------t 44547929  T
Q  203 gagcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
    ||| ||| | | |||| |||||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  44547928 gagtctgagaaccagccaccaccattcctagctcttgaggctgagcttgaggaccagccaccacccttcctagctctt 44547851  T

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Target: chr8; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 44548121 - 44547974
Alignment:
Q  124 tgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaacca 223  Q
    |||| ||||||||||||| |||||| || |||||| ||||| || |||  ||| ||||||||||| |||| |||||||||||| ||||||| ||| ||||    
T  44548121 tgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagtagcaaccacccttcccagctcttgaggttgagcatgtggagaagccacca 44548022  T
Q  224 cccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagct 277  Q
    ||||||||| |||||||| ||||      ||| |||||||||||||||||||||    
T  44548021 cccttcctatctcttgagcctga------ggaccagccaccacccttcctagct 44547974  T

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Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 44547481 - 44547405
Alignment:
Q  164 cttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttga 240  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||| ||| |||| |||||||||||||||||||||    
T  44547481 cttgaggaccagctaccaccctttctagctcttgaggttgagcctgaggaccagccaccacccttcctagctcttga 44547405  T

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Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 44547500 - 44547405
Alignment:
Q  103 acccttcctagcttttgagtctgagaaccagccaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttga 198  Q
    ||||||||||||| ||||   |||| |||||| |||||| || ||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  44547500 acccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttgaggttgagcctgaggaccagccaccacccttcctagctcttga 44547405  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 44548205 - 44548094
Alignment:
Q  160 tgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttgaggctgagcatgtggagcag 259  Q
    ||||| |||||||||||||| |||||||||||||||      |||| ||| | | |||  |||||| |||||| ||||||||||||||| || ||| |||    
T  44548205 tgagcctgaggaccagccactacccttcctagcttt------tgagtctgagaaccagtcaccaccattcctaactcttgaggctgagcttgaggaccag 44548112  T
Q  260 ccaccacccttcctagct 277  Q
    ||||||||||||||||||    
T  44548111 ccaccacccttcctagct 44548094  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 44548261 - 44548205
Alignment:
Q  224 cccttcctagctcttgaggctgagcatgtggagcagccaccacccttcctagctctt 280  Q
    ||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  44548261 cccttccaagctcttgaggctgagtttgtggagcagccaccatccttcctagctctt 44548205  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 44548261 - 44548196
Alignment:
Q  182 cccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttgaggctgag 247  Q
    ||||||| |||| |||||| ||||  ||||||||||| |||| ||||||||||||||||| |||||    
T  44548261 cccttccaagctcttgaggctgagtttgtggagcagccaccatccttcctagctcttgagcctgag 44548196  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 44548251 - 44548160
Alignment:
Q  150 ctcttgaggctgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagcagcaaccacccttcctagctcttgaggctgag 247  Q
    |||||||||||||| ||| ||| ||||||||| |||||||||||       ||||||||| ||| |||| || ||||||||||||| ||||| |||||    
T  44548251 ctcttgaggctgagtttgtggagcagccaccatccttcctagct------cttgagcctgaggaccagccactacccttcctagcttttgagtctgag 44548160  T

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