View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1800_low_16 (Length: 276)
Name: NF1800_low_16
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 44650501 - 44650256
Alignment:
| Q |
30 |
aaacgttggttccatttcaaccaatattcttctcgaacccgaattctcactttgtgtactccataattcaatgtttgattaatttgctctttctctgcct |
129 |
Q |
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| T |
44650501 |
aaacgttggttccatttcaagcaatattcttctcgaacccgaattctcactttgtgtactccataattcaatgtttgattaatttgctctttctctgcct |
44650402 |
T |
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| Q |
130 |
tccatattgtataatttataggtgaattgttgttatggtaattcacgtccttaatttgtgcttccatattgtatacttttaagttaactttggtaattca |
229 |
Q |
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||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650401 |
tccatat-gtataatttataggtaaattattgttatggtagttcacgtccttaatttgtgcttccatattgtatacttttaagttaactttggtaattca |
44650303 |
T |
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| Q |
230 |
ttcatggtccttagtttgtgctttcgagaccgagtagctctatacta |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650302 |
ttcatggtccttagtttgtgctttcgagaccgagtagctctatacta |
44650256 |
T |
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