View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1800_low_1_N (Length: 444)
Name: NF1800_low_1_N
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_low_1_N |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 6352344 - 6351944
Alignment:
| Q |
13 |
taggtgcaatggcttgtatacttctcacatctcaatgttatcaaaggatcttcctgccatgtgactaagctctcagtgcattcatctccttatactttag |
112 |
Q |
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| T |
6352344 |
taggtgcaatggcttgtatacttctcacatctcaatgttatcaaaggatcttcctgccatgtgactaagctctcactgcattcatctccttatactttag |
6352245 |
T |
|
| Q |
113 |
gcgttacgtcaaataataattctgtcatttgtaataaaatgcaacatatgattctactttggtatcaagtaaatccatttggtatgctagctaggccatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352244 |
gcgttacgtcaaataataattctgtcatttgtaataaaatgcaaactatgattctactttggtatcaagtaaatccatttggtatgctagctaggccatg |
6352145 |
T |
|
| Q |
213 |
ctaatggtcaatttgtcaaaaatgtaatttccatctgtaatataccaattgctagtaaagaactttatggtttttgtaattcttgctgtgttggtaaatc |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352144 |
ctaatggtcaa-ttgtcaaaaatgtaatttccatctgtaatataccaattgctagtaaagaactttatggtttttgtaattcttgctgtgttggtaaatc |
6352046 |
T |
|
| Q |
313 |
acatcgattacatactccactttccattactattcattctaaattatttgaagtaattcacacaaaattacggagccctactcctgagccatcacatttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352045 |
acatcgattacatactccactttccattactattcattctaaattatttgaagtaattcacacaaaattacggagccctactcctgagccatcacatttt |
6351946 |
T |
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| Q |
413 |
ag |
414 |
Q |
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|| |
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| T |
6351945 |
ag |
6351944 |
T |
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