View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1800_low_2 (Length: 423)

Name: NF1800_low_2
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1800_low_2
NF1800_low_2
[»] chr2 (10 HSPs)
chr2 (96-388)||(16657047-16657339)
chr2 (152-350)||(43625815-43626010)
chr2 (98-351)||(11999742-11999995)
chr2 (144-349)||(12235083-12235288)
chr2 (98-351)||(12244973-12245226)
chr2 (104-344)||(12258155-12258395)
chr2 (179-346)||(16661564-16661731)
chr2 (148-343)||(7542624-7542819)
chr2 (98-349)||(14703756-14704007)
chr2 (307-350)||(39373417-39373460)
[»] chr7 (26 HSPs)
chr7 (96-350)||(8667765-8668019)
chr7 (96-350)||(13333024-13333278)
chr7 (96-350)||(10493942-10494196)
chr7 (96-331)||(8671217-8671452)
chr7 (104-348)||(8659717-8659961)
chr7 (152-350)||(1301866-1302064)
chr7 (144-350)||(8654844-8655050)
chr7 (167-350)||(8585274-8585457)
chr7 (104-350)||(8647231-8647474)
chr7 (167-348)||(8628949-8629130)
chr7 (148-355)||(6789910-6790117)
chr7 (161-343)||(3147683-3147865)
chr7 (147-344)||(17268336-17268533)
chr7 (152-347)||(8640121-8640312)
chr7 (98-207)||(7877444-7877553)
chr7 (178-324)||(17260669-17260815)
chr7 (98-207)||(8602322-8602431)
chr7 (158-343)||(27830450-27830635)
chr7 (98-203)||(8590986-8591091)
chr7 (98-197)||(8636064-8636163)
chr7 (98-350)||(8545980-8546232)
chr7 (98-350)||(8582048-8582300)
chr7 (119-207)||(8538405-8538493)
chr7 (98-198)||(8570659-8570759)
chr7 (274-355)||(8588034-8588115)
chr7 (162-199)||(29581560-29581597)
[»] chr4 (3 HSPs)
chr4 (96-355)||(9335454-9335713)
chr4 (233-350)||(35132929-35133046)
chr4 (235-350)||(30775737-30775852)
[»] chr8 (1 HSPs)
chr8 (98-350)||(43745195-43745447)
[»] chr1 (4 HSPs)
chr1 (152-362)||(15595441-15595649)
chr1 (161-349)||(34466362-34466550)
chr1 (152-350)||(4678126-4678324)
chr1 (257-340)||(52549098-52549181)
[»] chr5 (2 HSPs)
chr5 (98-350)||(28220299-28220551)
chr5 (104-332)||(42555530-42555758)
[»] chr6 (1 HSPs)
chr6 (236-344)||(28911068-28911176)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 16657339 - 16657047
Alignment:
Q  96 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657339 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 16657240  T
Q  196 agcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 295  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657239 agcacaaaattggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 16657140  T
Q  296 tgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaacaacaataacaataataatagtaaaatcgtatcat 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657139 tgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaacaacaataacaataataatagtaaaatcgtatcat 16657047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 152 - 350
Target Start/End: Original strand, 43625815 - 43626010
Alignment:
Q  152 gcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcat 251  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||  |  ||||||||||||| || |  | | ||||||||||||||||||    
T  43625815 gcaacctctcgcatctttgtgaggatcatagacgatatttcctcaggacaaaaacgcttctcttgacccttgtattttacaataatcattggtttgtcat 43625914  T
Q  252 tcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
     ||| ||   ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  43625915 ccacccc---aatgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 351
Target Start/End: Original strand, 11999742 - 11999995
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    |||||||| |||||||||||| ||||||| || || || || | | |||||||||||| |||||||||||| || || | ||||||||||| ||| ||||    
T  11999742 taagctggtacagtaacaacaacattctttaccggtgattctaaatatgcctcagcaatttctcgcatcttcgttagtaccatagatgatacttcttcag 11999841  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    |||| |  ||  |||| || || || |||| || |||||| |||||||||||||| ||  | ||| |||||||||||||||| || |    ||||| |||    
T  11999842 cacatagctgcttctcctggcctttgtacttaacagtaattattggtttgtcattgacatcagcagtgaccttgaatggccataacaatccatcatcttg 11999941  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaac 351  Q
    ||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  11999942 aacaacaagatcactaaacttccaaccaattaacctcttagcatctgaaaaaac 11999995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 349
Target Start/End: Original strand, 12235083 - 12235288
Alignment:
Q  144 atgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattgg 243  Q
    |||||||||| | ||||||||||||||| || | ||||||||||| ||| || | ||| |  ||  ||||| ||||||| ||||  | | ||||||| ||    
T  12235083 atgcctcagcgatttctcgcatctttgtgagtaccatagatgatacttcttcgggacatagctgcttctctcgacccttgtacttgacaataatcatggg 12235182  T
Q  244 tttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatct 343  Q
    ||||||||| || || |||  |||||||||||||||||| || | ||||| |||||||||  ||||||||||||||||||| |||||||| |||||||||    
T  12235183 tttgtcattgacaccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatct 12235282  T
Q  344 gaaaaa 349  Q
    ||||||    
T  12235283 gaaaaa 12235288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 351
Target Start/End: Complemental strand, 12245226 - 12244973
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| || |||||||||||||||||||| || || || || | | |||||||||||| ||||||||||||||| || | ||||||||||| ||| ||||    
T  12245226 taagcaggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaatttctcgcatctttgttagtaccatagatgatacttcttcag 12245127  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    |||| |  ||  |||| || || || || | || |||||| |||||||||||||| || || ||| |||||||||| ||||| || |    |||||   |    
T  12245126 cacatagctgcttctcctggcctttgtagttaacagtaattattggtttgtcattgacaccagcagtgaccttgaacggccataataatgcatcatccag 12245027  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaac 351  Q
    ||||| ||||||||||||||||||||| ||||| || |||||||||||||||||    
T  12245026 aacaataggatcactaaacttcctaccaattaatctcttagcatctgaaaaaac 12244973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 104 - 344
Target Start/End: Complemental strand, 12258395 - 12258155
Alignment:
Q  104 ggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaa 203  Q
    |||||||||||||| |||||||| || || || || | | |||||||||||| ||||||||||||||| |  | || |||||||| |||||| |||||||    
T  12258395 ggcacagtaacaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcgcatctttgtcaataccacagatgatacttcctcggcacaaa 12258296  T
Q  204 agtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaac 303  Q
      ||  ||||||||  ||| ||||  |  |||||||| |||||| |||| || || ||| |||| || ||||||||||| || ||||||| |||||| ||    
T  12258295 gctgcttctcttgattcttgtactttaccgtaatcatgggtttgccattgacaccagcagtgactttaaatggccacaacattatatcatcttgaactac 12258196  T
Q  304 aggatcactaaacttcctaccgattaaccttttagcatctg 344  Q
      ||||||||||||||||||| |||||||| ||||||||||    
T  12258195 ttgatcactaaacttcctaccaattaacctcttagcatctg 12258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 16661731 - 16661564
Alignment:
Q  179 atagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggcc 278  Q
    |||||||| |||||||| ||||||| | |  |||| |||||||| |||| || | ||||| | ||||||||||| || || ||||| |||||||| ||||    
T  16661731 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 16661632  T
Q  279 acaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaa 346  Q
    |||| |  ||||| ||||||||||| || |||||||| |||||||| |||||||| ||||||||||||    
T  16661631 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagcatctgaa 16661564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 343
Target Start/End: Original strand, 7542624 - 7542819
Alignment:
Q  148 ctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttg 247  Q
    |||||||| ||||||||||||||| || | |||||||||||  || ||||||   |  ||  |||| ||| |||| |||| ||  |||||||| ||| ||    
T  7542624 ctcagcaatttctcgcatctttgtgagtaccatagatgatacctcttcagcatggagttgtttctcctgatccttgtacttaacggtaatcatgggtctg 7542723  T
Q  248 tcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatct 343  Q
    |||||  | || ||| | |||||||||||||| || |  ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||    
T  7542724 tcattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 349
Target Start/End: Original strand, 14703756 - 14704007
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| ||||| |||||||| |||||||| ||||  ||||| | | ||| |||||||| ||||||||||||    || | ||||||||||| ||| || |    
T  14703756 taagcaggcaccgtaacaactgcattcttaacagttgactctaaatatgtctcagcaatttctcgcatcttcaccagtaccatagatgatacttcttcgg 14703855  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    || | |  |   |||| ||| |||| |||| ||  |||||||| ||||||||||  ||||| ||| ||||||| |||||||| || |  ||||||| |||    
T  14703856 catagagcttcttctcctgatccttgtacttaaccgtaatcatgggtttgtcatcgactccagcagtgaccttaaatggccataaaagtatatcatcttg 14703955  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaa 349  Q
    ||||| |||||| ||||||||||| || |  ||||| |||||||||||||||    
T  14703956 aacaataggatcgctaaacttccttcccaacaacctcttagcatctgaaaaa 14704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  307 atcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 96 - 350
Target Start/End: Original strand, 8667765 - 8668019
Alignment:
Q  96 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 195  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| | ||||||| ||||| ||||||||||||||||| | |||||| |||||||||||    
T  8667765 agtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctc 8667864  T
Q  196 agcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 295  Q
    ||||||||||||  ||||||||||||| |||| || ||||||||| ||||||||||| || || | ||| ||||||||||||||||| |  |||||  ||    
T  8667865 agcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctt 8667964  T
Q  296 tgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||||| |||||    
T  8667965 tgaacaacggggtcactaaacttcctaccaattaacctcttagcatctgcaaaaa 8668019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 96 - 350
Target Start/End: Complemental strand, 13333278 - 13333024
Alignment:
Q  96 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 195  Q
    ||||||| |||||||||||||| ||||||||||| || ||| ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  13333278 agtaagccggcacagtaacaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatagatgatatttcctc 13333179  T
Q  196 agcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 295  Q
     |||||||||||  |||||||||||||  ||| |   |||||||| || ||||| || || || | | | ||||||||||||||||| || |||||||||    
T  13333178 ggcacaaaagtgcttctcttgacccttgcacttagcggtaatcataggcttgtcgttgacaccagaagtaaccttgaatggccacaacattatatcattt 13333079  T
Q  296 tgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  13333078 tgaacaaccggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 13333024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 96 - 350
Target Start/End: Complemental strand, 10494196 - 10493942
Alignment:
Q  96 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 195  Q
    ||||||| |||||||||||||||||||||||||| || ||| ||| | ||||||| ||||| |||||||||||| |||||| ||||||||||||||||||    
T  10494196 agtaagccggcacagtaacaacagcattcttgactggtgaccccaaatatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctc 10494097  T
Q  196 agcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 295  Q
     |||||||||||  ||||||||||||| |||| |   |||||||| ||||||||||| || || | | | ||||||||||||||||| || ||||| |||    
T  10494096 ggcacaaaagtgcttctcttgacccttgtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatggccacaacattatatcgttt 10493997  T
Q  296 tgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||||||| ||||||||||||||||| || |||||||| ||||||||| ||||||    
T  10493996 tgaacaaccggatcactaaacttcctgccaattaacctcttagcatctaaaaaaa 10493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 331
Target Start/End: Complemental strand, 8671452 - 8671217
Alignment:
Q  96 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 195  Q
    ||||||||||||| |||||||| ||||||||||| || ||||||| | ||||||| ||||| ||||||||||||||||| | |||||| |||||||||||    
T  8671452 agtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctc 8671353  T
Q  196 agcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 295  Q
    ||||||||| ||  ||||| |||| |  ||||  | ||||||||| ||||||||||| || || | ||| ||||||||||||||||| |  |||||  ||    
T  8671352 agcacaaaattgcttctctagaccttcgtacttgacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctt 8671253  T
Q  296 tgaacaacaggatcactaaacttcctaccgattaac 331  Q
    |||||||| |||||||||||||||||||| ||||||    
T  8671252 tgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 104 - 348
Target Start/End: Original strand, 8659717 - 8659961
Alignment:
Q  104 ggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaa 203  Q
    ||||| ||||||||||||||||| ||||| |||   | | ||| ||| |||||||||||||| |||||||| | |||||||||||||||||| |||||||    
T  8659717 ggcactgtaacaacagcattcttcacaggtgacattagatatgtctctgcaacttctcgcatttttgtaagtaccatagatgatatttcctccgcacaaa 8659816  T
Q  204 agtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaac 303  Q
    ||||  |||| |||||||| ||||||| | |||||||  ||||||| ||||| || || || ||||||||||||||||| || || || |||||||||||    
T  8659817 agtgcttctcctgacccttgtactgaacattaatcatgagtttgtcgttcacaccagcgataaccttgaatggccacaacatcatgtctttttgaacaac 8659916  T
Q  304 aggatcactaaacttcctaccgattaaccttttagcatctgaaaa 348  Q
     | |||||||||||||||||| ||||| || || |||||||||||    
T  8659917 tgaatcactaaacttcctaccaattaatctctttgcatctgaaaa 8659961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 152 - 350
Target Start/End: Original strand, 1301866 - 1302064
Alignment:
Q  152 gcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcat 251  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||  | ||||||||  |||| |||||||| |||| || |  |||||  ||||||||||    
T  1301866 gcaatttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacgggtttgtcat 1301965  T
Q  252 tcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||| ||||| |||||||||||||||||||| || || || ||||||||||| | |||||||||||||||||| ||||| || ||||||||||||||||    
T  1301966 tcacaccggcgatgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 1302064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 144 - 350
Target Start/End: Original strand, 8654844 - 8655050
Alignment:
Q  144 atgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattgg 243  Q
    ||||||| ||||  ||||||||||||||||| | |  |||||||||||||||||||||||| ||  |||||||||| || |||| || ||||||||| ||    
T  8654844 atgcctctgcaatctctcgcatctttgtaagaaccgcagatgatatttcctcagcacaaaattgcttctcttgacctttgtacttaacagtaatcatggg 8654943  T
Q  244 tttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatct 343  Q
    ||||||||| || || | | | ||| ||||||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||    
T  8654944 tttgtcattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagcatct 8655043  T
Q  344 gaaaaaa 350  Q
     ||||||    
T  8655044 aaaaaaa 8655050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 167 - 350
Target Start/End: Complemental strand, 8585457 - 8585274
Alignment:
Q  167 tttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatga 266  Q
    ||||| ||||| ||||||||||||||||||||||| | ||   | ||||||||||| |||| || ||||||||| ||||||||||| || || |  || |    
T  8585457 tttgtgaggatgatagatgatatttcctcagcacataggttcttttcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagagataa 8585358  T
Q  267 ccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  8585357 ccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 8585274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 350
Target Start/End: Original strand, 8647231 - 8647474
Alignment:
Q  104 ggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaa 203  Q
    |||||||||||||| |||||||| ||||| |||   | | ||  ||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||     
T  8647231 ggcacagtaacaactgcattctttacaggggacattaaatatttctctgcaacctctcgcatctttgtgaggatcatcgatgatatttcctcagcacaat 8647330  T
Q  204 agtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaac 303  Q
    |  |  |||||| |||||| || | || | ||||||| |||||||||||||| ||   |||||||||||||||||||||  |  ||||||| ||||||||    
T  8647331 aacgcttctcttcacccttgtatttaacaataatcatgggtttgtcattcacccc---aatgaccttgaatggccacaacttcttatcattctgaacaac 8647427  T
Q  304 aggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    || ||||  ||||||||||||||||||||| |||||||||| |||||    
T  8647428 agaatcaaaaaacttcctaccgattaacctcttagcatctggaaaaa 8647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 348
Target Start/End: Original strand, 8628949 - 8629130
Alignment:
Q  167 tttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatga 266  Q
    |||| |||||| ||||||||||||||||||||||| | ||   ||||||||||||| |||| || || |||||| || |||||||| |  || | ||| |    
T  8628949 tttgcaaggataatagatgatatttcctcagcacataggttcttctcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataa 8629048  T
Q  267 ccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaa 348  Q
    ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||    
T  8629049 ccttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctcttggcatctgaaaa 8629130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 355
Target Start/End: Original strand, 6789910 - 6790117
Alignment:
Q  148 ctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttg 247  Q
    ||||||||  || |||||||| || ||||||||||| || | ||||||| |||| |  ||  |||| | ||||||||||| || |  |||||| || |||    
T  6789910 ctcagcaatctcccgcatcttggtgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaatcatgggcttg 6790009  T
Q  248 tcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaa 347  Q
    ||||| || || |||||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  6790010 tcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagcatctgaaa 6790109  T
Q  348 aaacaaca 355  Q
    ||| ||||    
T  6790110 aaataaca 6790117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 343
Target Start/End: Original strand, 3147683 - 3147865
Alignment:
Q  161 cgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccgg 260  Q
    ||||||||||| || | ||||||||| ||||| |||||||| | |||  |||| || |||||  ||| ||  | |||||| ||||||||||||||||||     
T  3147683 cgcatctttgttagaaccatagatgagatttcttcagcacataggtgcttctcctgtcccttgcacttaaccgaaatcatgggtttgtcattcactccgc 3147782  T
Q  261 caatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatct 343  Q
     ||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||| |||||||| || ||||||    
T  3147783 aaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctttgcatct 3147865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 344
Target Start/End: Original strand, 17268336 - 17268533
Alignment:
Q  147 cctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggttt 246  Q
    |||||||||  || ||||||||||| || | |||||| || |||||||| |||||||||||  ||||  | ||||| ||||  || | ||||||||||||    
T  17268336 cctcagcaatctcccgcatctttgtgagtaccatagacgaaatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggttt 17268435  T
Q  247 gtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctg 344  Q
    ||||||||   | ||||||||||||||||||||| | || ||||| ||||| || ||||||||||||||||||||||| ||||  || ||||||||||    
T  17268436 gtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 17268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 152 - 347
Target Start/End: Complemental strand, 8640312 - 8640121
Alignment:
Q  152 gcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcat 251  Q
    ||||| ||||||||||| | |||||||||||||||||||||||| ||||||||  |  |||||| |||||| || | || | ||||| | ||||||||||    
T  8640312 gcaacctctcgcatcttcgaaaggatcatagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatcgtgggtttgtcat 8640213  T
Q  252 tcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaa-cttcctaccgattaaccttttagcatctgaaa 347  Q
    |||| |   ||||||||||||||||||||||  | ||||||||||||||||||| | ||  ||| ||||||||| |||||||  |||||||||||||    
T  8640212 tcaccc---caatgaccttgaatggccacaacttcatatcattttgaacaacagaaacaaaaaaccttcctaccaattaacc--ttagcatctgaaa 8640121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 7877553 - 7877444
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| |||||||||||||| |||||||||||||| ||||||| |||   ||| ||||  || |||||||||||||||||||| |||||||||||||| |    
T  7877553 taagccggcacagtaacaactgcattcttgacaggtgactccaaaaacttctctgcaatctcgcgcatctttgtaaggatcatggatgatatttcctcgg 7877454  T
Q  198 cacaaaagtg 207  Q
    ||||||||||    
T  7877453 cacaaaagtg 7877444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 17260669 - 17260815
Alignment:
Q  178 catagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggc 277  Q
    |||||| || |||||||| |||||||||||  ||||  | ||||| ||||  || | ||||||||||||||||||||   | ||||||||||||||||||    
T  17260669 catagacgagatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggc 17260768  T
Q  278 cacaagatgatatcattttgaacaacaggatcactaaacttcctacc 324  Q
    ||| | || ||||| ||||| || |||||||||||||||||||||||    
T  17260769 cacgacattatatctttttggaccacaggatcactaaacttcctacc 17260815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 8602322 - 8602431
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| |||||||||||||| |||||||||||||| ||||||| |||   ||| |||| ||| |||||||||||||||| ||| ||||| ||||||||||    
T  8602322 taagccggcacagtaacaactgcattcttgacaggtgactccagaaacttctctgcaatttcacgcatctttgtaaggaccattgatgagatttcctcag 8602421  T
Q  198 cacaaaagtg 207  Q
    |||| |||||    
T  8602422 cacagaagtg 8602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 343
Target Start/End: Complemental strand, 27830635 - 27830450
Alignment:
Q  158 tctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactc 257  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||| |||||  |||| |||| ||| |||| || |  || ||| |||||||  || ||      
T  27830635 tctcgcatctttgtaaggaccattgatgaaatttcctccgcacataagtgtttctcctgactcttgtacttaacaacaaacatgggtttgttgtttacat 27830536  T
Q  258 cggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatct 343  Q
    | | |||||| |||||| |||||||| | ||||| ||||||||||||  ||| || ||||||||||| |||||||| |||||||||    
T  27830535 cagtaatgactttgaatagccacaagtttatatctttttgaacaacatcatcgctgaacttcctaccaattaacctcttagcatct 27830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 8590986 - 8591091
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||    |||||||  |||||||||||||| || | ||| ||||| |||||||| |    
T  8590986 taagctggcacagtaacaactgcattcttgacaggtgactccaaaaacttttcagcaatctctcgcatctttgtgagaaccatggatgagatttcctccg 8591085  T
Q  198 cacaaa 203  Q
    ||||||    
T  8591086 cacaaa 8591091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 8636163 - 8636064
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| ||||||||||  || |||||||||||||  || |||| | ||||||||||||  |||||||||||||| |||| |||||| |||||||||||||    
T  8636163 taagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaatctctcgcatctttgtcaggaccatagacgatatttcctcag 8636064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 350
Target Start/End: Original strand, 8545980 - 8546232
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| || |||||||  || |||||||| ||||| ||||||| ||||||||| ||||  |||||||||| ||  ||||||| |||||||||||| ||||    
T  8545980 taagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcag 8546079  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    ||  ||||||  | || | |||||| || |  | |  |||  | ||||||||||| || |||| ||||||||| || |||||||| |  | |||||| ||    
T  8546080 caacaaagtgcttttcctcacccttgtagttcacaagaattgtcggtttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctg 8546179  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||||  | ||||||| | ||||| || |||||||| || ||||||| |||||    
T  8546180 aacaaaggaatcactatatttccttccaattaacctctttgcatctgcaaaaa 8546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 350
Target Start/End: Original strand, 8582048 - 8582300
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| || |||||||  || |||||||| ||||| ||||||| ||||||||| ||||  |||||||||| ||| || || | |||||||||||| ||||    
T  8582048 taagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgtcagaataacagatgatatttcttcag 8582147  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    ||  ||||||  | || | |||||| || |  | |   ||  | |||||||||||  | || ||  |||||||||| ||||||||  ||||||| |||||    
T  8582148 caagaaagtgtttttccttacccttgtagttcacaacgattgtcggtttgtcattagcacctgcggtgaccttgaagggccacaacttgatatccttttg 8582247  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||||  | ||||||| | ||||| || |||||||| || |||||||||||||    
T  8582248 aacaatggaatcactatatttccttccaattaacctctttgcatctgaaaaaa 8582300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 8538405 - 8538493
Alignment:
Q  119 gcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtg 207  Q
    ||||| |||||||| ||||||| |||| | ||||| |  || ||||||||||| |||| ||||| ||||||||| |||||| |||||||    
T  8538405 gcatttttgacaggtgactccaaaaatacttcagcgaactcccgcatctttgtgaggaccatagctgatatttcttcagcaaaaaagtg 8538493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 8570659 - 8570759
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| || |||||||  || |||||||| ||||| ||||||| |||||| || ||||  |||||||||||||  || |||| |||||||||||| ||||    
T  8570659 taagcaggtacagtaatcactgcattcttaacaggagactccaaaaatgcttctgcaatctctcgcatctttgagagaatcacagatgatatttcttcag 8570758  T
Q  198 c 198  Q
    |    
T  8570759 c 8570759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 8588034 - 8588115
Alignment:
Q  274 tggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaaca 355  Q
    ||||||||| || ||||||||||||||||  | || ||||||||||| || ||  ||||| || |||||||||||| |||||    
T  8588034 tggccacaacatcatatcattttgaacaatggaataactaaacttcccacagaccaacctctttgcatctgaaaaagcaaca 8588115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 29581597 - 29581560
Alignment:
Q  162 gcatctttgtaaggatcatagatgatatttcctcagca 199  Q
    |||||||||  |||||||||||||||||||||||||||    
T  29581597 gcatctttgagaggatcatagatgatatttcctcagca 29581560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 96 - 355
Target Start/End: Complemental strand, 9335713 - 9335454
Alignment:
Q  96 agtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctc 195  Q
    ||||||||||||| |||||||| ||||||||||| |||||| ||| | ||||||| ||||| |||| |||||||||||| | |||||| |||||||||||    
T  9335713 agtaagctggcacggtaacaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctctcatctttgtaagcaacatagaagatatttcctc 9335614  T
Q  196 agcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattt 295  Q
    ||||||||||||  ||||||||||||| || | || ||||||||| ||||||||||| || || | ||| ||||||||||||||||| |  |||||  ||    
T  9335613 agcacaaaagtgcttctcttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctt 9335514  T
Q  296 tgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaaca 355  Q
    ||||||||  |||||||||||||||||||  |||| || |||||||||| ||||| ||||    
T  9335513 tgaacaaccagatcactaaacttcctaccagttaatctcttagcatctgcaaaaataaca 9335454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 350
Target Start/End: Original strand, 35132929 - 35133046
Alignment:
Q  233 gtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaacc 332  Q
    |||||||| ||||||||||| || |||||| |||||||||||||||| |  |  ||||||| |||||||| ||||||||||||||||||||| |||||||    
T  35132929 gtaatcatgggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaacc 35133028  T
Q  333 ttttagcatctgaaaaaa 350  Q
    ||||||||||||||||||    
T  35133029 ttttagcatctgaaaaaa 35133046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 350
Target Start/End: Original strand, 30775737 - 30775852
Alignment:
Q  235 aatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaacctt 334  Q
    |||||| ||||||||||| || || | ||  ||||||||||||||||| |  ||||| |||||||||||||| || ||||| |||||||| |||||||||    
T  30775737 aatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaacctt 30775836  T
Q  335 ttagcatctgaaaaaa 350  Q
    ||||||||||||||||    
T  30775837 ttagcatctgaaaaaa 30775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 98 - 350
Target Start/End: Original strand, 43745195 - 43745447
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| |||||||||||||| ||||||||||||||| | | || ||||| ||| ||||  || ||||||||||| || ||||||||||| ||||| || |    
T  43745195 taagccggcacagtaacaactgcattcttgacaggcaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgagatttcttcgg 43745294  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    |||| | |||  |||| || ||||| |||| || || |||||  ||||||||||||| ||||| |||||||||||| ||||||||  | |||||||||||    
T  43745295 cacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcatatcattttg 43745394  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||| ||| |||| ||||||||||||| |||||||| ||||||||||| ||||    
T  43745395 aacatcagaatcattaaacttcctaccaattaacctcttagcatctgacaaaa 43745447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 15595441 - 15595649
Alignment:
Q  152 gcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcat 251  Q
    ||||| |||||||||||| | || |||||||| ||||||||||||||||||||| |  | ||||||||||| || | || | ||||||| ||||||||||    
T  15595441 gcaacctctcgcatctttttgagaatcatagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatcatgggtttgtcat 15595540  T
Q  252 tcactccggcaatgaccttgaatggccacaagatgatatcattttgaac-aacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    |||| |   ||||||||||||||||||||||  | |||||||||||||| ||||| ||||||||||||||||| |||||| || ||||||||||||||||    
T  15595541 tcacac---caatgaccttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagcatctgaaaaaa 15595637  T
Q  351 caacaacaataa 362  Q
     ||||| |||||    
T  15595638 taacaaaaataa 15595649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 161 - 349
Target Start/End: Complemental strand, 34466550 - 34466362
Alignment:
Q  161 cgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccgg 260  Q
    |||||||||| ||||||||||||||| |||||||||||||| | |||  |||| ||||||||||||| ||| | ||||||||| |||||||| || || |    
T  34466550 cgcatctttgaaaggatcatagatgagatttcctcagcacataggtgcttctcctgacccttatacttaagggaaatcattggcttgtcattaacaccag 34466451  T
Q  261 caatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaa 349  Q
    |||| || ||||||||||| || || |||||  |||||||| ||||||||||||| || || || |||||||| |||||||||||||||    
T  34466450 caataactttgaatggccataacatcatatctgtttgaacatcaggatcactaaattttctgccaattaacctcttagcatctgaaaaa 34466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 152 - 350
Target Start/End: Complemental strand, 4678324 - 4678126
Alignment:
Q  152 gcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcat 251  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| ||| ||  ||  ||||||||||||| |||| || | ||||||| ||||| ||||    
T  4678324 gcaacttctctcatctttgtaaggatcatcgatgatatttcctcaacactaacttgcttctcttgacccttgtacttaacactaatcatcggtttatcat 4678225  T
Q  252 tcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    || | || |  |||||| | ||||||||||| ||||| || ||||||||||||| ||||||| || ||||||| |||||||| |||||||||| |||||    
T  4678224 tctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctgcaaaaa 4678126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 52549181 - 52549098
Alignment:
Q  257 ccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagca 340  Q
    |||||| |||||||||||| ||| || |  ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||    
T  52549181 ccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 52549098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 98 - 350
Target Start/End: Original strand, 28220299 - 28220551
Alignment:
Q  98 taagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcag 197  Q
    ||||| |||||||||| ||| ||||||||||||||  | |||| ||| ||||| ||||  || ||||||||||| || | ||||||||| ||||| || |    
T  28220299 taagcaggcacagtaataactgcattcttgacaggaaattccaaaaaggcctctgcaatctcacgcatctttgttagaaccatagatgagatttcttcgg 28220398  T
Q  198 cacaaaagtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttg 297  Q
    |||| | |||  |||| || ||||| |||| || || |||||| |||||||| |||  ||||| |||||||||||||||||||||  | ||||||| |||    
T  28220399 cacataggtgcttctcctgtcccttgtacttaacagaaatcatgggtttgtcgttcgttccggaaatgaccttgaatggccacaactttatatcatcttg 28220498  T
Q  298 aacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 350  Q
    ||||||||  ||||||||||||||||| |||||||| ||||||||||||||||    
T  28220499 aacaacagagtcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 332
Target Start/End: Complemental strand, 42555758 - 42555530
Alignment:
Q  104 ggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaa 203  Q
    |||||||||||||| |||||||||||||||   |||| ||||||||| ||||  |  ||||||||||| || ||||||||||| ||||| || || || |    
T  42555758 ggcacagtaacaactgcattcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcata 42555659  T
Q  204 agtggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaac 303  Q
     |||  |||| || ||||  |||   | |  |||||| || ||| |||| | ||||| |||||||||||||||||||||  | || ||||||||||||||    
T  42555658 ggtgtttctcctgtccctcgtacgttacataaatcatgggcttgccatttattccggaaatgaccttgaatggccacaacttcatgtcattttgaacaac 42555559  T
Q  304 aggatcactaaacttcctaccgattaacc 332  Q
    |  |||| ||||||||||||| |||||||    
T  42555558 ataatcattaaacttcctaccaattaacc 42555530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 28911068 - 28911176
Alignment:
Q  236 atcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttt 335  Q
    ||||| || |||||||| || ||||||||||||||||| ||| |||| ||   ||| ||||||||||| |||||||||||||||||| | |||| ||| |    
T  28911068 atcatggggttgtcattgacaccggcaatgaccttgaacggcgacaacattgaatcgttttgaacaacgggatcactaaacttcctatcaattatcctct 28911167  T
Q  336 tagcatctg 344  Q
    |||||||||    
T  28911168 tagcatctg 28911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University