View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1800_low_4 (Length: 371)
Name: NF1800_low_4
Description: NF1800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1800_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 7622573 - 7622835
Alignment:
| Q |
11 |
ttcattgcaggacacgttcttcttccacttccaaatgtaattaagctcaaaactcttccctttaaattccactgaactcataaagaaactttcaggataa |
110 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||| || ||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||| |
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| T |
7622573 |
ttcattgcaggacacattcttcttccacttccaaatggaatcaa-ctcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataa |
7622671 |
T |
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| Q |
111 |
aactcctcatgttcttctcaattttcaggatccctttctatggcccatgtattaacatagactagagtttttggtttaatctcataaccatctatgttac |
210 |
Q |
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| T |
7622672 |
aactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcataaccatctatgttac |
7622771 |
T |
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| Q |
211 |
aactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctcttt |
274 |
Q |
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| T |
7622772 |
aactttctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctcttt |
7622835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 7627124 - 7627386
Alignment:
| Q |
11 |
ttcattgcaggacacgttcttcttccacttccaaatgtaattaagctcaaaactcttccctttaaattccactgaactcataaagaaactttcaggataa |
110 |
Q |
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| T |
7627124 |
ttcattgcaggacacattcttcttccacttccaaatggaatcaa-ctcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataa |
7627222 |
T |
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| Q |
111 |
aactcctcatgttcttctcaattttcaggatccctttctatggcccatgtattaacatagactagagtttttggtttaatctcataaccatctatgttac |
210 |
Q |
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| T |
7627223 |
aactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtttaatctcataaccatctatgttac |
7627322 |
T |
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| Q |
211 |
aactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctcttt |
274 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627323 |
aactttctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctcttt |
7627386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 7634260 - 7634522
Alignment:
| Q |
11 |
ttcattgcaggacacgttcttcttccacttccaaatgtaattaagctcaaaactcttccctttaaattccactgaactcataaagaaactttcaggataa |
110 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||||||||||||||| ||| |||||||||||| |
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| T |
7634260 |
ttcattgcaggacacattcttcttccacttccaaatggaatta-gctcaaaatttttccctttaaagtccactgaactcataatgaacctttcaggataa |
7634358 |
T |
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| Q |
111 |
aactcctcatgttcttctcaattttcaggatccctttctatggcccatgtattaacatagactagagtttttggtttaatctcataaccatctatgttac |
210 |
Q |
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||||| ||| | |||| ||||| |||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
7634359 |
aactcttcagggtctttccaattctcaggatcccttcctatggcccatgcattaacatacactaaagtttttggtttaatctcataaccatctatgttac |
7634458 |
T |
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| Q |
211 |
aactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctcttt |
274 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||| || |||||||| | ||||||||| |
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| T |
7634459 |
aattttctattgtttctcttggtactagtaatggtgatggtggaaataatctcattgtctcttt |
7634522 |
T |
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