View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18010_high_7 (Length: 361)

Name: NF18010_high_7
Description: NF18010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18010_high_7
NF18010_high_7
[»] chr4 (6 HSPs)
chr4 (14-361)||(43388725-43389069)
chr4 (14-361)||(14195357-14195701)
chr4 (54-316)||(43391375-43391634)
chr4 (237-286)||(33993568-33993617)
chr4 (239-300)||(53962333-53962395)
chr4 (245-292)||(50117367-50117414)
[»] chr2 (4 HSPs)
chr2 (136-301)||(38615237-38615399)
chr2 (239-300)||(38610292-38610354)
chr2 (245-285)||(23886513-23886553)
chr2 (245-309)||(24137041-24137106)
[»] chr1 (5 HSPs)
chr1 (124-285)||(51392564-51392720)
chr1 (239-300)||(49209275-49209337)
chr1 (247-301)||(19832615-19832670)
chr1 (245-361)||(19862390-19862508)
chr1 (326-361)||(14547174-14547209)
[»] chr3 (5 HSPs)
chr3 (134-258)||(3797824-3797944)
chr3 (245-300)||(49839917-49839973)
chr3 (239-300)||(3793890-3793952)
chr3 (326-361)||(16705141-16705176)
chr3 (247-300)||(16706446-16706500)
[»] chr7 (1 HSPs)
chr7 (239-292)||(46148994-46149047)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 43389069 - 43388725
Alignment:
Q  14 aggaatgtatgtatgttcccagtttaatgcttcccatgcctaaattgcaacagtgaagtatcttgaggaaaggaggtgagaatgagggcaagataacagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43389069 aggaatgtatgtatgttcccagtttaatgcttcccatgcctaaattgcaacagtgaagtatcttgaggaaaggaggtgagaatgagggcgagataacagt 43388970  T
Q  114 ctgtgtgttcatatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaa 213  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||   ||||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  43388969 ctgtgtgtgcatatgattgctgggttgtaaaatgaggaagaaactta---agagagagaaatagaagacaagataagcaagtgatagaggtgagagaaaa 43388873  T
Q  214 tcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatcaatccattattttaatcttaa 313  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||    
T  43388872 tcatatagagaaagtgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttgctgaggtggagtagatcaattcattgttttaatcctaa 43388773  T
Q  314 ggtnnnnnnnnngcatcttttactccctcatgtcatgagggacctatt 361  Q
    |||         ||||||||| ||||| ||||||||||||||||||||    
T  43388772 ggtaaaaaaaaagcatcttttgctcccacatgtcatgagggacctatt 43388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 14195701 - 14195357
Alignment:
Q  14 aggaatgtatgtatgttcccagtttaatgcttcccatgcctaaattgcaacagtgaagtatcttgaggaaaggaggtgagaatgagggcaagataacagt 113  Q
    ||||||| |||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14195701 aggaatgcatgtatgttcacagtttaatgattcccatgcctaatttgcaacaatgaagtatcttgaggaaaggaggtgagaatgagggcaagatagcagt 14195602  T
Q  114 ctgtgtgttcatatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaa 213  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||   ||||| ||||||||||||||||||||||| |||||| || ||||||||||    
T  14195601 ctgtgtgtgcatatgatttctgggttgtaaaatggggaagaaactta---agagagagaaatagaagacaagataagcaagtgatagagatgagagaaaa 14195505  T
Q  214 tcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatcaatccattattttaatcttaa 313  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  14195504 tcatatagagaaagtgtgtggtctattttgattgagtgtggagaggtgtatgtgctctcttgctgaggtggagtagatcaatccattattttaatcctaa 14195405  T
Q  314 ggtnnnnnnnnngcatcttttactccctcatgtcatgagggacctatt 361  Q
    |||         ||||||||| ||||||||||||||||||||||||||    
T  14195404 ggtagaaaaaaagcatcttttgctccctcatgtcatgagggacctatt 14195357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 54 - 316
Target Start/End: Original strand, 43391375 - 43391634
Alignment:
Q  54 taaattgcaacagtgaagtatcttgaggaaaggaggtgagaatgagggcaagataacagtctgtgtgttcatatgatttctgggttgtaaaatgaggaaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||| |||||||||||||| | ||     
T  43391375 taaattgcaacagtgaagtatcttgaggaaaggaggtgagaacgagggcaagagaacagtctctgtattcatatgatttatgggttgtaaaatgggaaag 43391474  T
Q  154 aaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtg 253  Q
    ||||||| |||||||||    ||| | | |||||||||| |||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  43391475 aaacttaaagagagaaa----tagcaaagaagataagcaagtgatagaggggagagaaaatcatatgcagaaaatgtgtggtctattttgattgagtgtg 43391570  T
Q  254 gagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatcttaaggt 316  Q
    |||| || |||||| ||||||| |||||||||| |||| |||||||||  ||||||| ||||||    
T  43391571 gagaagtacatgtgttctcttgttgaggtggagcagatccaatccatttatttaatcctaaggt 43391634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 33993617 - 33993568
Alignment:
Q  237 tattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggag 286  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33993617 tatttggattgagtgtggagaggtgcatgtgctctcttgatgaggtggag 33993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 53962395 - 53962333
Alignment:
Q  239 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 300  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| ||||||||    
T  53962395 ttttgattgagtgtggagaggtacatgtgctctcttgctgagatggagcagatctaatccatt 53962333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 50117367 - 50117414
Alignment:
Q  245 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc 292  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||    
T  50117367 ttgagtgtagagaggtgcatgtgctctcttgatgaggtggagcagatc 50117414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 301
Target Start/End: Original strand, 38615237 - 38615399
Alignment:
Q  136 ggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggt 235  Q
    |||||||||||| |||| ||||||||||||||||    |||||||| |||||| ||| |||||| |  ||||||||||||||||  | ||| ||||||||    
T  38615237 ggttgtaaaatggggaagaaacttagagagagaa----atagaagagaagatatgcaagtgatagaaatgagagaaaatcatatgtaaaaagtgtgtggt 38615332  T
Q  236 ctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatta 301  Q
    || |||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  38615333 ctgttttgattgagtatggagaggtgcatgtgctctcttgctgaggtggagcagatccaatccatta 38615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 38610354 - 38610292
Alignment:
Q  239 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 300  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  38610354 tttttattgagtgtggagaggtgcatgtgctctcttgctgaggtggagcagatccaatccatt 38610292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 23886513 - 23886553
Alignment:
Q  245 ttgagtgtggagaggtgcatgtgctctcttggtgaggtgga 285  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23886513 ttgagtgtggagaggtgcatgtgctctcttgctgaggtgga 23886553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 24137106 - 24137041
Alignment:
Q  245 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatc 309  Q
    ||||||||| ||||||| | ||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  24137106 ttgagtgtgaagaggtgtaggtgctctcttgctgaggtggagtagatcctatccattgttttaatc 24137041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 285
Target Start/End: Original strand, 51392564 - 51392720
Alignment:
Q  124 atatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagag 223  Q
    ||||||||| |||||||||||||| |||| |||||||   ||||| |||||||| ||| |||||||||| |||||  ||| |||||||||||||||  ||    
T  51392564 atatgatttatgggttgtaaaatggggaagaaactta---agagagagaaatagcagagaagataagcaagtgatgcaggggagagaaaatcatatgaag 51392660  T
Q  224 aaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtgga 285  Q
    |   ||| ||||||  |||| ||||||||||||||||||||||||||||||| |||||||||    
T  51392661 ag--tgtctggtctgctttggttgagtgtggagaggtgcatgtgctctcttgctgaggtgga 51392720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 49209275 - 49209337
Alignment:
Q  239 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 300  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||    
T  49209275 ttttgattgagtgtggagaggtacatgtgctctcttgctgaggtggagcagatctaatccatt 49209337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 19832670 - 19832615
Alignment:
Q  247 gagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatta 301  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||    
T  19832670 gagtgtggagaggtgtaggtgctctcttgctgaggtggagtagatccaatccatta 19832615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 19862390 - 19862508
Alignment:
Q  245 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatcttaaggt-nnnnnnnnngcatcttttactccctc 342  Q
    ||||||||||||||||| | ||||||||||| | ||||||||||||| |||||||||  ||| ||| ||||||          ||||||||| |||||||    
T  19862390 ttgagtgtggagaggtgtaggtgctctcttgcttaggtggagtagatccaatccattgctttgatcctaaggtaaaaaaaaaagcatcttttgctccctc 19862489  T
Q  343 atgtcatgagggacctatt 361  Q
    || ||||||||||||||||    
T  19862490 atatcatgagggacctatt 19862508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 14547209 - 14547174
Alignment:
Q  326 gcatcttttactccctcatgtcatgagggacctatt 361  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14547209 gcatcttttgctccctcatgtcatgagggacctatt 14547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 3797824 - 3797944
Alignment:
Q  134 tgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtg 233  Q
    |||||||||||||| |||| ||| ||||||||||||    |||||||| |||||| ||| |||||| ||| ||||||||| ||| |  ||||||||||||    
T  3797824 tgggttgtaaaatggggaagaaatttagagagagaa----atagaagagaagataggcaagtgatagaggggagagaaaagcatgtgcagaaaatgtgtg 3797919  T
Q  234 gtctattttgattgagtgtggagag 258  Q
    || | ||||||||||||||||||||    
T  3797920 gtttgttttgattgagtgtggagag 3797944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 49839917 - 49839973
Alignment:
Q  245 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 300  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  49839917 ttgagtgtggagaggtgcatgtgctctcttgatgaggtggagcagatctaatccatt 49839973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 3793952 - 3793890
Alignment:
Q  239 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 300  Q
    ||||||||||||||||||||||||||||||||||||| ||| || || ||||| |||||||||    
T  3793952 ttttgattgagtgtggagaggtgcatgtgctctcttgctgaagttgaatagatccaatccatt 3793890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 16705176 - 16705141
Alignment:
Q  326 gcatcttttactccctcatgtcatgagggacctatt 361  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16705176 gcatcttttgctccctcatgtcatgagggacctatt 16705141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 16706500 - 16706446
Alignment:
Q  247 gagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 300  Q
    ||||||||||||||| | ||||||||||| |||| |||||||||| |||||||||    
T  16706500 gagtgtggagaggtgtaggtgctctcttgctgagatggagtagatccaatccatt 16706446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 46149047 - 46148994
Alignment:
Q  239 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc 292  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  46149047 ttttggttgagtgtggagaggtgcatgtgctctcttgatgaggtggagcagatc 46148994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University