View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18011_high_1 (Length: 546)
Name: NF18011_high_1
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18011_high_1 |
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| [»] scaffold0172 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 29963489 - 29963721
Alignment:
| Q |
18 |
agaaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcactagtgtacgtatcaccctatatactatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29963489 |
agaaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcactagtgtacgtatccccctatatactatat |
29963588 |
T |
|
| Q |
118 |
---attgatcaaaatcctatcatttctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaacttacttggtgatgatga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963589 |
tatattgatcaaaatcctatcatttctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaacttacttggtgatgatga |
29963688 |
T |
|
| Q |
215 |
atttcttaaagtggactctaatctctctcgacc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
29963689 |
atttcttaaagtggactctaatctctctcgacc |
29963721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 2038665 - 2038485
Alignment:
| Q |
20 |
aaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcactagtgtacgtatcaccctatatactatatat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2038665 |
aaaataaattcaactcatttgaatacttgattttatgttttcaggctacattaaattggttcacggcactagtatacgtatcaccctatatactatatat |
2038566 |
T |
|
| Q |
120 |
tgatcaaaatcctatcatttctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2038565 |
tgatcaaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaactta |
2038485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 329 - 474
Target Start/End: Original strand, 29963803 - 29963948
Alignment:
| Q |
329 |
ggcagttgaaacaaagcaaaagtacttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963803 |
ggcagttgaaacaaagcaaaagtacttgtgtttccctgtatgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg |
29963902 |
T |
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| Q |
429 |
ataatgatgataggattcttacttgtctccctagagtgaatgtttg |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963903 |
ataatgatgataggattcttacttgtctccctagagtgaatgtttg |
29963948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 329 - 474
Target Start/End: Complemental strand, 2038279 - 2038136
Alignment:
| Q |
329 |
ggcagttgaaacaaagcaaaagtacttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
2038279 |
ggcagttgaaacaaagcaaaagtacttgtgtt-ccctgtatgatatacgataaaatagggaatgattttggtt-atcattaataattgacatgaatagtg |
2038182 |
T |
|
| Q |
429 |
ataatgatgataggattcttacttgtctccctagagtgaatgtttg |
474 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2038181 |
atagtgatgataggattcttacttgtctccctagagtgaatgtttg |
2038136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 2038405 - 2038355
Alignment:
| Q |
197 |
cttacttggtgatgatgaatttcttaaagtggactctaatctctctcgacc |
247 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
2038405 |
cttacttggtgacgatgaatttcttatagtggactctaatctctctcgacc |
2038355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 35056 - 35238
Alignment:
| Q |
18 |
agaaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcactagtgtacgtatcaccctatatactatat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35056 |
agaaaataaattcaactcatttgaatacttgattttatgttttcaggctacattaaattggttcacggcactagtgtacgtatcaccctatatactatat |
35155 |
T |
|
| Q |
118 |
attgatcaaaatcctatcatttctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaactta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35156 |
attgatcaaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaactta |
35238 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 329 - 474
Target Start/End: Original strand, 34518533 - 34518680
Alignment:
| Q |
329 |
ggcagttgaaacaaagcaaaagtacttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcatta---ataattgacatgaaga |
425 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34518533 |
ggcagttgaaacaaagcaaaggtacttgtgtt-ccctgtatgataaacgataaaatagggaatgattttggttcatcattattaataattgacatgaaga |
34518631 |
T |
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| Q |
426 |
gtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34518632 |
gtgataatgatgataggattcttacttgtctccctagagtgaatatttg |
34518680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 8889369 - 8889324
Alignment:
| Q |
197 |
cttacttggtgatgatgaatttcttaaagtggactctaatctctct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8889369 |
cttacttggtgatgatgaatttcttaaagttgactctaatctctct |
8889324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 329 - 474
Target Start/End: Original strand, 188818 - 188962
Alignment:
| Q |
329 |
ggcagttgaaacaaagcaaaagtacttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| | |
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|
| T |
188818 |
ggcagttgaaacaaagcaaaagtacttgtgtt-ccctctatgatatacgataaaatagggaatgattctggttcatcattaataattaaaatgaagattt |
188916 |
T |
|
| Q |
429 |
ataatgatgataggattcttacttgtctccctagagtgaatgtttg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
188917 |
ataatgatgataggattcttacttgtctccctaaagtgaatgtttg |
188962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 380 - 474
Target Start/End: Complemental strand, 44667951 - 44667857
Alignment:
| Q |
380 |
aaaatagggaatgattttggttcatcattaataattgacatgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
474 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
44667951 |
aaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagagtgaatgtttg |
44667857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 12539015 - 12539119
Alignment:
| Q |
330 |
gcagttgaaacaaagcaaaagt-acttgtgtttccctgtacgatatacgat-aaaatagggaatgattttggttcatcattaataattgacatgaagagt |
427 |
Q |
| |
|
|||||||||||||||||||| | ||||||| | |||| || |||| |||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| |
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|
| T |
12539015 |
gcagttgaaacaaagcaaaaataacttgtg-tgccctatatgatactcgataaaaatagggaatgattttggttcatcaataatagttgcaatgaagagt |
12539113 |
T |
|
| Q |
428 |
gataat |
433 |
Q |
| |
|
||||| |
|
|
| T |
12539114 |
aataat |
12539119 |
T |
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