View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18011_high_3 (Length: 543)
Name: NF18011_high_3
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18011_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 37601897 - 37601389
Alignment:
| Q |
19 |
ttataatctccctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaatttaaacatcataaaaggagcacaatgcaaaattcatttat |
118 |
Q |
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| T |
37601897 |
ttataatctccctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaatttaaacatcataaaaggagcacaatgcaaaattcatttat |
37601798 |
T |
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| Q |
119 |
atggagttnnnnnnnnnggaccttaaagcctctttcaatgaacttgacagcatataactcgccactccatttttcccttataagctttgcaacaccaaag |
218 |
Q |
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| T |
37601797 |
atggagttaaaaaaaaaagaccttaaagcctctttcaatgaacttgacagcatataactcgccactccatttttcccttataagctttgcaacaccaaag |
37601698 |
T |
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| Q |
219 |
ttacctgatccaatatctttaattatttcatatctttccatggttaagcttgaactctatattgatatagctagcaacttagttagaacgggttccttct |
318 |
Q |
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| T |
37601697 |
ttacctgatccaatatctttaattatttcatatctttccatggttaagcttgaactctatattgatatagctagcaacttagttagaacgggttccttct |
37601598 |
T |
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| Q |
319 |
tgtatgtgaaagttgtaggtaattgattgaatgagcttatttttctttgtttcttgttgtacttgtactagctgtttgcgtgcatctatctattttatgg |
418 |
Q |
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| T |
37601597 |
tgtatgtgaaagttgtaggtaattgattgaatgagcttatttttctttgtttcttgttgtacttgtactagctgtttgcgtgcatctatctattttatgg |
37601498 |
T |
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| Q |
419 |
tttccaaattccaacgcgcaaaggtttgctgaaaaatatgattgggttttagatgccctttattgcaagttactactacaattactacaattggacttcc |
518 |
Q |
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| T |
37601497 |
tttccaaattccaacgcgcaaaggtttgctgaaaaatatgattgggttttagatgccctttattgcaagtta---ctacaattactacaattggacttcc |
37601401 |
T |
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| Q |
519 |
aataatatgcct |
530 |
Q |
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| T |
37601400 |
aataatatgcct |
37601389 |
T |
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