View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18011_high_6 (Length: 281)
Name: NF18011_high_6
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18011_high_6 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 112894 - 112631
Alignment:
| Q |
1 |
taataattttattatatatacattcatgcaatgaacatacgaaacnnnnnnnttacatagctaacatctctagtagttcttttgacgatttttaaaaata |
100 |
Q |
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| T |
112894 |
taataattttattatatatacattcatgcaatgaacatacgaaacaaaaaaattacatagctaacatctctagtagttcttttgacgatttttaaaaata |
112795 |
T |
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| Q |
101 |
tgtagataaatctctagttcattctaacaaggagttgaatattttacttgtaccatgtgtgctgtcataaatctctacaacatcattctaacaaggaatt |
200 |
Q |
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| T |
112794 |
tgtagataaatctctagttcattctaacaaggagttgaatattttacttgtaccatgtgtgctgtcataaatctctacaacatcattctaacaaggaatt |
112695 |
T |
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| Q |
201 |
gaatattacgtgtaccacatgcaaactccattccctttagcaacattttatctaacgttatatc |
264 |
Q |
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| T |
112694 |
gaatattacgtgtaccacatgcaaactccattccctttagcaacattttatctaacgttatatc |
112631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 6762 - 6616
Alignment:
| Q |
75 |
agttcttttgacgatttttaaaaatatgtagataaatctctagttcattctaacaaggagttgaatattttacttgtaccatgtgtgctgtcataaatct |
174 |
Q |
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| T |
6762 |
agttattttgacgattttcacaaatgtgaagatacatatctagttcattcgaacaagga-ttgaatattttatttgtaccatgtgctatggcataaatct |
6664 |
T |
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| Q |
175 |
ctacaacatcattctaacaaggaattgaatattacgtgtaccacatgc |
222 |
Q |
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| T |
6663 |
ttagaccgtcattctaaaaaggagttgaatattacgtgtaccacatgc |
6616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 50615405 - 50615499
Alignment:
| Q |
59 |
agctaacatctctagtagttcttttgacgatttttaaaaatatgtagataaatctctagttcattctaacaaggagttgaatattttacttgtacca |
155 |
Q |
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||||||||||||||||| |||||||||| |||| | |||| ||||||| ||| |||||||| |||||| | |||||||||| |||||||||||| |
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| T |
50615405 |
agctaacatctctagtacttcttttgacaatttccacaaatgtgtagattaatatctagttcgttctaatacagagttgaata--ttacttgtacca |
50615499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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