View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18011_low_2 (Length: 544)

Name: NF18011_low_2
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18011_low_2
NF18011_low_2
[»] chr6 (4 HSPs)
chr6 (144-354)||(1663724-1663925)
chr6 (1-90)||(1663581-1663670)
chr6 (381-527)||(1663942-1664088)
chr6 (1-86)||(31046676-31046763)
[»] chr4 (2 HSPs)
chr4 (180-263)||(43970824-43970907)
chr4 (467-507)||(14352016-14352056)
[»] chr3 (1 HSPs)
chr3 (175-282)||(35189455-35189562)
[»] chr7 (1 HSPs)
chr7 (459-523)||(22529104-22529168)
[»] chr8 (2 HSPs)
chr8 (459-524)||(30334778-30334843)
chr8 (459-523)||(27926111-27926175)
[»] chr5 (1 HSPs)
chr5 (459-507)||(27646720-27646768)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 144 - 354
Target Start/End: Original strand, 1663724 - 1663925
Alignment:
Q  144 tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1663724 tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactg 1663823  T
Q  244 ttcatcgtggtgtttatgatggcatagatgttgctggtacttctctcnnnnnnnnnnnnnnnnnctctcactttcatgcattgtactctctttcttattt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||    
T  1663824 ttcatcgtggtgtttatgatggcatagatgttgctggtacttctct---------tttttttctctctcactttcatgcattgtactctctttcttattt 1663914  T
Q  344 tggcattggtg 354  Q
    |||||||||||    
T  1663915 tggcattggtg 1663925  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1663581 - 1663670
Alignment:
Q  1 agagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggactatgg 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1663581 agagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggactatgg 1663670  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 381 - 527
Target Start/End: Original strand, 1663942 - 1664088
Alignment:
Q  381 ccttatctcacataacatgaagaacagcactgttaaacgtgtttgacttggagcaattctgagaagtttctcaaaaaa-----gagtgagaacaaaatat 475  Q
    ||||||||||||||||||||||||| |     |||||||||||| ||||||||||||| |||||||||||| | |||      |||||||||||||||||    
T  1663942 ccttatctcacataacatgaagaacgg-----ttaaacgtgtttaacttggagcaattatgagaagtttcttagaaagcgtgcgagtgagaacaaaatat 1664036  T
Q  476 gctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaattgt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1664037 gctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaattgt 1664088  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 31046763 - 31046676
Alignment:
Q  1 agagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatctt--agtagagcatggact 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  31046763 agagtggtggatatgtgagagcagatcaaatagatctgaagagtttagacgaacaattacaaaggcatcttacagtagagcatggact 31046676  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 43970824 - 43970907
Alignment:
Q  180 tgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgat 263  Q
    ||||| ||||||||||||||||| || ||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  43970824 tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgat 43970907  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 14352016 - 14352056
Alignment:
Q  467 acaaaatatgctaaaaagattcatgttggtttgtctggtca 507  Q
    |||||||||||| |||||| |||||||||||||| ||||||    
T  14352016 acaaaatatgctgaaaagactcatgttggtttgtatggtca 14352056  T

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Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 35189455 - 35189562
Alignment:
Q  175 aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgt 274  Q
    |||| ||||| |||||||||||||| || || ||||| | |||| | |||||||| ||||| ||||||||||| |||||| | |||||||||  ||||||    
T  35189455 aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgt 35189554  T
Q  275 tgctggta 282  Q
    ||||||||    
T  35189555 tgctggta 35189562  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 22529168 - 22529104
Alignment:
Q  459 gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaa 523  Q
    ||||||| |||||||| ||| |||||| ||||||||||||||  ||||| |||||||| ||||||    
T  22529168 gagtgaggacaaaatacgctgaaaagactcatgttggtttgtagggtcagtcgacaatgcttaaa 22529104  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 524
Target Start/End: Complemental strand, 30334843 - 30334778
Alignment:
Q  459 gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaat 524  Q
    |||||| ||||||| | | |||||||| |||||||| |||||  | ||||||||||||||||||||    
T  30334843 gagtgaaaacaaaacacgttaaaaagactcatgttgatttgtgggatcaatcgacaatacttaaat 30334778  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 27926111 - 27926175
Alignment:
Q  459 gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtcaatcgacaatacttaaa 523  Q
    ||||||| |||||| ||||| |||||| || |||||||||||  ||||| |||||||| ||||||    
T  27926111 gagtgaggacaaaacatgctgaaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaa 27926175  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 27646768 - 27646720
Alignment:
Q  459 gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtca 507  Q
    ||||||| |||||| ||||| |||||| |||||||||||||| ||||||    
T  27646768 gagtgaggacaaaacatgctgaaaagactcatgttggtttgtatggtca 27646720  T

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