View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18011_low_5 (Length: 331)
Name: NF18011_low_5
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18011_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 12868275 - 12868372
Alignment:
| Q |
117 |
cccagggccttttataagctacaatgtcattttaaaaccaaatcaattaaccaccaaaaggttaacttcatataaactcaaacctatagctgcaaaag |
214 |
Q |
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| T |
12868275 |
cccagggccttttataagctacaatgtcattttaaaaccaaatcaattaaccaccaaaaggttaacttcatataaactcaaacctatagctgcaaaag |
12868372 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 12868168 - 12868204
Alignment:
| Q |
10 |
catcatcatggaataaaatctctatagttacaattac |
46 |
Q |
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| T |
12868168 |
catcatcatgaaataaaatctctatagttacaattac |
12868204 |
T |
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