View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18011_low_6 (Length: 323)
Name: NF18011_low_6
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18011_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 18362647 - 18362943
Alignment:
| Q |
8 |
ataattctgcaatgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccgaaagaaggctaagtgaaatgcatccaatc |
107 |
Q |
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| T |
18362647 |
ataattctgcaatgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccaaaagaaggctaagtgaaatgcatccaatc |
18362746 |
T |
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| Q |
108 |
catcgaatattgaatcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggagaaattcttgagagaatgttat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18362747 |
catcgaatattgaatcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggaggaattcttgagagaatgttat |
18362846 |
T |
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| Q |
208 |
ttcctggtgaaacctgtatgcaaataacctgtgatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaa |
304 |
Q |
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| T |
18362847 |
ttcctggtgaaacctgtatgcaaataacctgtgatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaa |
18362943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 3018814 - 3019110
Alignment:
| Q |
8 |
ataattctgcaatgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccgaaagaaggctaagtgaaatgcatccaatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3018814 |
ataattctgcaatgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccaaaagaaggctaagtgaaatgcatccaatc |
3018913 |
T |
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| Q |
108 |
catcgaatattgaatcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggagaaattcttgagagaatgttat |
207 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3018914 |
catcgaatattgagtcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggaggaattcttgagagaatgttat |
3019013 |
T |
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| Q |
208 |
ttcctggtgaaacctgtatgcaaataacctgtgatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019014 |
ttcctggtgaaacctgtatgcaaataacctgtgatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaa |
3019110 |
T |
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