View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18011_low_7 (Length: 310)
Name: NF18011_low_7
Description: NF18011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18011_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 40722259 - 40721968
Alignment:
| Q |
1 |
agaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctctctt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40722259 |
agaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctgtctt |
40722160 |
T |
|
| Q |
101 |
tttcccatgcttttttatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttc |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
40722159 |
tttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttc |
40722060 |
T |
|
| Q |
201 |
cttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttccatttttctccacaagtcgagtcataccgctatttc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | | ||||||||||||||||||||||||| |
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| T |
40722059 |
cttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggtttcgttttccacgacaagtcgagtcataccgctatttc |
40721968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 16003912 - 16003614
Alignment:
| Q |
1 |
agaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctctctt |
100 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
16003912 |
agaaaattacataagtcaacaatacca---tctctctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttttattctctagctgtctt |
16003816 |
T |
|
| Q |
101 |
tttcccatgcttttttatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttc |
200 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
16003815 |
tttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttc |
16003716 |
T |
|
| Q |
201 |
cttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttccatttttctccacaagtcgagtcataccgctatttctgtgctcc |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
16003715 |
ctttcaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgttcc |
16003616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 26795295 - 26794994
Alignment:
| Q |
1 |
agaaaactgcataagtcaacaataccaccatctctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttctt---ttgttctctagctct |
97 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
26795295 |
agaaaatttcataagtcaacaatacca---tctctctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttcttttgttctctagctgt |
26795199 |
T |
|
| Q |
98 |
ctttttcccatgcttttttatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgat |
197 |
Q |
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||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26795198 |
ctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgat |
26795099 |
T |
|
| Q |
198 |
ttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttccatttttctccacaagtcgagtcataccgctatttctgtgc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
26795098 |
ttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctagttccgttttcctccacaagtcgagtcataccgctatttatgtgt |
26794999 |
T |
|
| Q |
298 |
tcctc |
302 |
Q |
| |
|
||||| |
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|
| T |
26794998 |
tcctc |
26794994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 27221862 - 27222063
Alignment:
| Q |
40 |
tttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctctctttttcccatgcttttttatagctcttaccaccataaacat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| || |
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| T |
27221862 |
tttatgacacacggttaccaaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatat |
27221961 |
T |
|
| Q |
140 |
ggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctctattgatttccttccaattctcaaaattaaagacctttgttgttgatca |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27221962 |
ggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatca |
27222061 |
T |
|
| Q |
240 |
aa |
241 |
Q |
| |
|
|| |
|
|
| T |
27222062 |
aa |
27222063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 27222822 - 27222875
Alignment:
| Q |
242 |
tattcaccctggttccatttttctccacaagtcgagtcataccgctatttctgt |
295 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgt |
27222875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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