View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18012_high_12 (Length: 201)

Name: NF18012_high_12
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18012_high_12
NF18012_high_12
[»] scaffold0087 (10 HSPs)
scaffold0087 (22-186)||(12475-12639)
scaffold0087 (14-186)||(55115-55287)
scaffold0087 (14-176)||(19519-19681)
scaffold0087 (14-176)||(29867-30029)
scaffold0087 (50-151)||(33899-34000)
scaffold0087 (54-151)||(39950-40047)
scaffold0087 (19-137)||(816-935)
scaffold0087 (19-137)||(15705-15824)
scaffold0087 (50-170)||(5488-5609)
scaffold0087 (50-170)||(22603-22724)
[»] chr6 (25 HSPs)
chr6 (16-186)||(5755431-5755601)
chr6 (16-186)||(5760909-5761079)
chr6 (40-152)||(5882934-5883046)
chr6 (29-152)||(5880206-5880329)
chr6 (53-152)||(5763943-5764042)
chr6 (53-152)||(5767478-5767577)
chr6 (53-152)||(5771013-5771112)
chr6 (53-152)||(5774548-5774647)
chr6 (53-152)||(5778083-5778182)
chr6 (53-152)||(5781618-5781717)
chr6 (53-152)||(5785153-5785252)
chr6 (53-152)||(5788688-5788787)
chr6 (53-152)||(5792223-5792322)
chr6 (53-152)||(5795758-5795857)
chr6 (53-152)||(5799293-5799392)
chr6 (53-152)||(5802828-5802927)
chr6 (53-152)||(5806363-5806462)
chr6 (53-152)||(5809898-5809997)
chr6 (53-152)||(5813433-5813532)
chr6 (53-152)||(5816968-5817067)
chr6 (53-152)||(5820503-5820602)
chr6 (50-151)||(5829827-5829928)
chr6 (53-162)||(5890170-5890279)
chr6 (41-135)||(5826966-5827060)
chr6 (50-149)||(5852773-5852872)


Alignment Details
Target: scaffold0087 (Bit Score: 141; Significance: 4e-74; HSPs: 10)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 12639 - 12475
Alignment:
Q  22 atcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12639 atcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacattcaagtatctcaaactcgaagataaattccag 12540  T
Q  122 aaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  12539 aaccatttaggaaatgaatctgaaataccacaattagaaatatttagatcagcaagccccctttg 12475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 55287 - 55115
Alignment:
Q  14 caaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagata 113  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  55287 caaatatcttcataatttacattcagactttgtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatctcaaactcgaaggta 55188  T
Q  114 aattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||    
T  55187 aattccagaaccatttaggaaatgaatctgaaataccacaattagagatatttatatcagtaagccacctttg 55115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 19681 - 19519
Alignment:
Q  14 caaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagata 113  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  19681 caaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaatatccaagtatgtcaaactcgaagata 19582  T
Q  114 aattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaa 176  Q
    ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19581 aattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaa 19519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 30029 - 29867
Alignment:
Q  14 caaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagata 113  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  30029 caaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaatatccaagtatgtcaaactcgaagata 29930  T
Q  114 aattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaa 176  Q
    ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29929 aattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaa 29867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 34000 - 33899
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 149  Q
    ||||||||||||| ||| || ||| ||||||| ||||||| |||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  34000 gattttggcaaggttcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaatac 33901  T
Q  150 ca 151  Q
    ||    
T  33900 ca 33899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 40047 - 39950
Alignment:
Q  54 ttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatacca 151  Q
    |||||||||||||||| ||||||||||  || || | ||||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||||    
T  40047 ttggcaagggtccattaagtttgttatacgatacgttcaagtatgtcaaacttgaagatagattccaaaaccattttggaaatgaatctaaaatacca 39950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 935 - 816
Alignment:
Q  19 ataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaatt 117  Q
    |||||||||| |||| ||   |||||| || ||||| |||||||| ||||||||||||||||| ||||||| |||||||  ||||| | |||||||||||    
T  935 ataatcataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaatt 836  T
Q  118 ccagaaccatttaggaaatg 137  Q
    ||| || |||||||| ||||    
T  835 ccaaaatcatttagggaatg 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 15824 - 15705
Alignment:
Q  19 ataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaatt 117  Q
    |||||||||| |||| ||   |||||| || ||||| |||||||| ||||||||||||||||| ||||||| |||||||  ||||| | |||||||||||    
T  15824 ataatcataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaatt 15725  T
Q  118 ccagaaccatttaggaaatg 137  Q
    ||| || |||||||| ||||    
T  15724 ccaaaatcatttagggaatg 15705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 5609 - 5488
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaattccagaaccatttaggaaatgaatctgaaata 148  Q
    ||||| |||||||| ||||||||||||||||| ||||||  |||||||  ||||| | |||||||||||||| || ||||| || ||||||||| ||||     
T  5609 gatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaaaatcatttggggaatgaatctaaaatg 5510  T
Q  149 ccacatttagagatatttagat 170  Q
    ||    ||||||||||||||||    
T  5509 ccgttattagagatatttagat 5488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 22724 - 22603
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaattccagaaccatttaggaaatgaatctgaaata 148  Q
    ||||| |||||||| ||||||||||||||||| ||||||  |||||||  ||||| | |||||||||||||| || ||||| || ||||||||| ||||     
T  22724 gatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaaaatcattttgggaatgaatctaaaatg 22625  T
Q  149 ccacatttagagatatttagat 170  Q
    ||    ||||||||||||||||    
T  22624 ccgttattagagatatttagat 22603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 5755601 - 5755431
Alignment:
Q  16 aatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  5755601 aatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaatccaagtatttcaaacttgaagataaa 5755502  T
Q  116 ttccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    ||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5755501 ttcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttg 5755431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 5761079 - 5760909
Alignment:
Q  16 aatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  5761079 aatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaatccaagtatttcaaacttgaagataaa 5760980  T
Q  116 ttccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    ||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5760979 ttcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttg 5760909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 5883046 - 5882934
Alignment:
Q  40 acttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaa 139  Q
    |||||| || |||||||||||||||||||| ||||||||||| ||||||| |||||||  |||||||||||| | |||||| ||||||||||||| ||||    
T  5883046 acttggaaatgattttggcaagggtccattaagtttgttatgtgaaacattcaagtattccaaactcgaagagagattccaaaaccatttaggaactgaa 5882947  T
Q  140 tctgaaataccac 152  Q
    |||||||||||||    
T  5882946 tctgaaataccac 5882934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 5880329 - 5880206
Alignment:
Q  29 tttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatt 128  Q
    ||||| |||| |||||| ||| ||||||||||| ||||||  ||||||||||| ||||||| |||||||  |||||| ||||||| |||||| |||||||    
T  5880329 tttactttcaaacttggaaagtattttggcaagtgtccatgaagtttgttatgtgaaacattcaagtattgcaaacttgaagatagattccaaaaccatt 5880230  T
Q  129 taggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||||||||||    
T  5880229 taggaaatgaatctgaaataccac 5880206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5764042 - 5763943
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5764042 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5763943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5767577 - 5767478
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5767577 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5767478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5771112 - 5771013
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5771112 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5771013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5774647 - 5774548
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5774647 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5774548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5778182 - 5778083
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5778182 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5778083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5781717 - 5781618
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5781717 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5781618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5785252 - 5785153
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5785252 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5785153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5788787 - 5788688
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5788787 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5788688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5792322 - 5792223
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5792322 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5792223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5795857 - 5795758
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5795857 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5795758  T

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Target: chr6; HSP #15
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5799392 - 5799293
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5799392 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5799293  T

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Target: chr6; HSP #16
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5802927 - 5802828
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5802927 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5802828  T

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Target: chr6; HSP #17
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5806462 - 5806363
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5806462 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5806363  T

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Target: chr6; HSP #18
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5809997 - 5809898
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5809997 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5809898  T

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Target: chr6; HSP #19
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5813532 - 5813433
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5813532 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5813433  T

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Target: chr6; HSP #20
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5817067 - 5816968
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5817067 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5816968  T

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Target: chr6; HSP #21
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5820602 - 5820503
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5820602 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5820503  T

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Target: chr6; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 5829928 - 5829827
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 149  Q
    ||||||||||||| ||| || ||| ||||||| ||||||| |||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  5829928 gattttggcaaggttcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaatac 5829829  T
Q  150 ca 151  Q
    ||    
T  5829828 ca 5829827  T

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Target: chr6; HSP #23
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 5890170 - 5890279
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    |||||||| |||||||| |||| |||||| ||||||| |||||||   ||||||||||| | |||||| |||||||||||||||||||| ||||||||||    
T  5890170 tttggcaaaggtccattaagttggttatgtgaaacattcaagtattgtaaactcgaagagagattccaaaaccatttaggaaatgaatccgaaataccac 5890269  T
Q  153 atttagagat 162  Q
    | ||||||||    
T  5890270 aattagagat 5890279  T

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Target: chr6; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 5827060 - 5826966
Alignment:
Q  41 cttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaa 135  Q
    ||||| || |||||||||||||||||||| | ||||||||| ||||||| ||||||   |||||| ||||||| |||||| ||||||||||||||    
T  5827060 cttggaaaagattttggcaagggtccattaattttgttatgtgaaacattcaagtaatgcaaacttgaagatagattccaaaaccatttaggaaa 5826966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 5852872 - 5852773
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 149  Q
    |||||||||||   ||| || ||| ||||||| ||||||| |||||||  ||||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  5852872 gattttggcaacattcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagcttccaaaaccatttaggaaatgaatctgaaatac 5852773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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