View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_high_7 (Length: 319)
Name: NF18012_high_7
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 40185990 - 40186266
Alignment:
| Q |
26 |
ttgaattacagattcatcacatataattcttctttcttctttatcccatccataattagttaagtttgagttttgagtaatgagcttcttgaggccatct |
125 |
Q |
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| T |
40185990 |
ttgaattacagattcatcacatataattcttctttcttctttatcccatccataattagttaagtttgagttttgagtaatgagcttcttgaggccatct |
40186089 |
T |
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| Q |
126 |
gcgatgtacaattttttgattacttatccttcatcacgatggatgccatgtcagagttgggggttccttcgatggccaggtcttgaaggtttcttaagac |
225 |
Q |
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| T |
40186090 |
gcgatgtacaattttttgattacttatccttcatcacgatggatgccatgtcagagttgggggttccttcgatggccaggtcttgaaggtttcttaagac |
40186189 |
T |
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| Q |
226 |
ttctcgtcgtttttcttctttggtctaccttctcccatctctgctatataccttcttcttctatgtaccctaccctt |
302 |
Q |
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| T |
40186190 |
ttctcgtcgtttttcttctttggtctaccttctcccatctctgctatataccttcttcttctatgtaccctaccctt |
40186266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 83 - 302
Target Start/End: Original strand, 40187305 - 40187521
Alignment:
| Q |
83 |
agttaagtttgagttttgagtaatgagcttcttgaggccatctgcgatgtacaattttttgattacttatccttcatcacgatggatgccatgtcagagt |
182 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||| | |||||| ||| | |||| ||||||| |||||||||||||||||||||||| |
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| T |
40187305 |
agttaagtttgagttttgagtaatgagctttgtgaggccgtctgcaacgtacaactttgtatttacatatccttagtcacgatggatgccatgtcagagt |
40187404 |
T |
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| Q |
183 |
tgggggttccttcgatggccaggtcttgaaggtttcttaagacttctcgtcgtttttcttctttggtctaccttctcccatctctgctatataccttctt |
282 |
Q |
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| T |
40187405 |
tgggggttccttcgatggccaggtcttcacgaattctcaagacttcttgtggttttccttctttggtctaccttctcccaattctgttacatac---ctt |
40187501 |
T |
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| Q |
283 |
cttctatgtaccctaccctt |
302 |
Q |
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||| |||||||||||||||| |
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| T |
40187502 |
cttttatgtaccctaccctt |
40187521 |
T |
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