View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_high_8 (Length: 261)
Name: NF18012_high_8
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 14811603 - 14811369
Alignment:
| Q |
18 |
agaaattatataaggtatgactcttctttagtagggagtaatgtgaaaggttcaaagaagtctaattcaaaattatctttaactagtttttctttgtttg |
117 |
Q |
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| T |
14811603 |
agaaattatataaggtatgactcttctttagtagggagtaatgtgaaaggttcaaagaagtctaattcaaaattatctttaactagtttttctttgtttg |
14811504 |
T |
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| Q |
118 |
ggatttctttctctctagaccaaatagattgatttgttcttgctttattggttttcagtgcacgaggtttccttgtttgtggatattttatgttttgttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811503 |
ggatttctttctctctagaccaaatagattgatttgttcttgctttattggttttcagtgcacgaggtttccttgtttgtggatattttatgttttgttg |
14811404 |
T |
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| Q |
218 |
gttttgccatgagaaatatttctaatgcattcatc |
252 |
Q |
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| T |
14811403 |
gttttgccatgagaaatatttctaatgcattcatc |
14811369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 15258598 - 15258364
Alignment:
| Q |
18 |
agaaattatataaggtatgactcttctttagtagggagtaatgtgaaaggttcaaagaagtctaattcaaaattatctttaactagtttttctttgtttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15258598 |
agaaattatataaggtatgactcttctttagtagggagtaatgtgaaaggttcaaagaagtctaattcaaaattatctttaactagtttttctttgtttg |
15258499 |
T |
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| Q |
118 |
ggatttctttctctctagaccaaatagattgatttgttcttgctttattggttttcagtgcacgaggtttccttgtttgtggatattttatgttttgttg |
217 |
Q |
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| T |
15258498 |
ggatttctttctctctagaccaaatagattgatttgttcttgctttattggttttcagtgcacgaggtttccttgtttgtggatattttatgttttgttg |
15258399 |
T |
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| Q |
218 |
gttttgccatgagaaatatttctaatgcattcatc |
252 |
Q |
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| T |
15258398 |
gttttgccatgagaaatatttctaatgcattcatc |
15258364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 17522667 - 17522824
Alignment:
| Q |
93 |
tctttaactagtttttctttgtttgggatttctttctctctagaccaaatagattgatttgttcttgctttattggttttcagtgcacgaggtttccttg |
192 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17522667 |
tctttaactagtttttctttgtttgggatttctttttctctagaccaaatagattgatttgttcttgctttagtggttttcagtgcacgaggtttccttc |
17522766 |
T |
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| Q |
193 |
tttgtggatattttatgttttgttggttttgccatgagaaatatttctaatgcattca |
250 |
Q |
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||||||||||||||||||||||||||||| | | ||||||| |||||||||||||||| |
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| T |
17522767 |
tttgtggatattttatgttttgttggtttcgacgtgagaaaaatttctaatgcattca |
17522824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 17522594 - 17522650
Alignment:
| Q |
37 |
actcttctttagtagggagtaatgtgaaag-gttcaaagaagtctaattcaaaatta |
92 |
Q |
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|||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||| |
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| T |
17522594 |
actcttatttagtagggagtaaagtgaaaatgttcaaggaagtctaattcaaaatta |
17522650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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