View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_low_1 (Length: 625)
Name: NF18012_low_1
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 54218320 - 54217772
Alignment:
| Q |
18 |
aattacggtccacttaggaggtcatggttatcatagtggtcattacgatccacactggtcactatagtagctgtgttatgctcctgcaattcggtttcag |
117 |
Q |
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| T |
54218320 |
aattacggtccacttaggaggtcatggttatcatagtgatcattacgatccacactggtcactatagtagctgtgttatgctcctgcaattcggtttcag |
54218221 |
T |
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| Q |
118 |
agccatcatcatgtaacggcgaatgcacaggtgaccccgcttctcctcctcctaattttcgagtttccttcgagcgtccttttgatggtttcttatgcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218220 |
agccatcatcatgtaacggcgaatgcacaggtgaccccgcttctcctcctcctaatgttcgagtttccttcgagcgtccttttgatggtttcttatgcat |
54218121 |
T |
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| Q |
218 |
tgcatttttacgccagttttgcaatgcctttgatgtttgctcgtcaaatattgaccgcttcatcgttgatcccatctgatatttttaaatcataacaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218120 |
tgcatttttacgccagttttgcaatgcctttgatgtttgctcgtcaaatattgaccgcttcatcgttgatcccatctgatatttttaaatcataacaaca |
54218021 |
T |
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| Q |
318 |
agattaatattctccttcatcaattcatttcattttttaatacaaagtttctatactttgcttgcttaacaagtattataagggtacttgttaacatgac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54218020 |
agattaatattctccttcatcaattcatttcatttttcaatacaaagtttctatactttgcttgcttaacaagtatcataagggtacttgttaacatgac |
54217921 |
T |
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| Q |
418 |
cttaaaaatgaaatgtacctgtgtgacgagtgcatagagaggaagtgtgatatagctgcaaacaaattgagcacccaccctgcataattcaacttcaact |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54217920 |
cttaaaaatgaaatgtacctgtgtgacgagtgcatagagaggaagtgtgatatagctgcaaacaaattgagcacccaccctgcataattcaacttcaact |
54217821 |
T |
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| Q |
518 |
tagattatagttgttataactgaattaatttaattcaatttgtttcttg |
566 |
Q |
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| T |
54217820 |
tagattatagttgttataactgaattaatttaattcaatttgtttcttg |
54217772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 586 - 625
Target Start/End: Complemental strand, 54217747 - 54217708
Alignment:
| Q |
586 |
ggctaataggtagatctcatctcctatgtaaccctttttc |
625 |
Q |
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| T |
54217747 |
ggctaataggtagatctcatctcctatgtaaccctttttc |
54217708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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