View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18012_low_10 (Length: 250)

Name: NF18012_low_10
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18012_low_10
NF18012_low_10
[»] chr7 (4 HSPs)
chr7 (97-250)||(14811172-14811325)
chr7 (97-250)||(15258167-15258320)
chr7 (193-250)||(14810650-14810707)
chr7 (193-250)||(15257645-15257702)
[»] chr5 (2 HSPs)
chr5 (97-250)||(17522870-17523023)
chr5 (193-250)||(17523540-17523597)
[»] chr4 (6 HSPs)
chr4 (196-250)||(46829457-46829511)
chr4 (193-240)||(3159089-3159135)
chr4 (207-250)||(51152184-51152227)
chr4 (193-250)||(31932308-31932366)
chr4 (194-247)||(24789238-24789291)
chr4 (194-247)||(24818968-24819021)
[»] chr2 (4 HSPs)
chr2 (193-250)||(44150058-44150115)
chr2 (193-250)||(13548917-13548974)
chr2 (194-250)||(15261430-15261486)
chr2 (205-247)||(27666269-27666311)
[»] chr3 (3 HSPs)
chr3 (193-247)||(42168041-42168095)
chr3 (195-248)||(33937409-33937461)
chr3 (198-250)||(37451789-37451842)
[»] chr1 (1 HSPs)
chr1 (206-250)||(30678314-30678358)
[»] chr6 (1 HSPs)
chr6 (193-250)||(15175859-15175915)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 14811172 - 14811325
Alignment:
Q  97 cccataccatttaggacttataatatctctctttcacatacaaaattaattatataatgtatcaaaacgacttataatttaggatggatcaagtatttaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811172 cccataccatttaggacttataatatctctctttcacatacaaaattaattatataatgtatcaaaacgacttataatttaggatggatcaagtatttaa 14811271  T
Q  197 ataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811272 ataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 14811325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 15258167 - 15258320
Alignment:
Q  97 cccataccatttaggacttataatatctctctttcacatacaaaattaattatataatgtatcaaaacgacttataatttaggatggatcaagtatttaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15258167 cccataccatttaggacttataatatctctctttcacatacaaaattaattatataatgtatcaaaacgacttataatttaggatggatcaagtatttaa 15258266  T
Q  197 ataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15258267 ataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 15258320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 14810650 - 14810707
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  14810650 ttaaataagtgatttttcacatatttacagctttctttcgttggttttgtgatttcgt 14810707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 15257645 - 15257702
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  15257645 ttaaataagtgatttttcacatatttacagctttctttcgttggttttgtgatttcgt 15257702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 17523023 - 17522870
Alignment:
Q  97 cccataccatttaggacttataatatctctctttcacatacaaaattaattatataatgtatcaaaacgacttataatttaggatggatcaagtatttaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||    
T  17523023 cccataccatttaggacttataatatctctctttcacatacaaaattaattatataatgtatcaaaacgatttataatttaggacggatgaagtaattaa 17522924  T
Q  197 ataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17522923 ataagtgatttttcacatatttccaactttctttcgttcgttttgtgatttcgt 17522870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 17523597 - 17523540
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  17523597 ttaaataaatgatttttcacatatttacagctttctttcgttggttttgtgatttcgt 17523540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 46829457 - 46829511
Alignment:
Q  196 aataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||||||||||||| || |||||||||||| |||||| ||||||||    
T  46829457 aataagtgatttttcacatattttcatctttctttcgttggttttgggatttcgt 46829511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 3159089 - 3159135
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgtttt 240  Q
    |||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  3159089 ttaaataagtgatttt-cacatattttcagctttctttcgtttgtttt 3159135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 51152184 - 51152227
Alignment:
Q  207 tttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    |||||||||||| | ||||||||||||| |||||||||||||||    
T  51152184 tttcacatattttctgctttctttcgtttgttttgtgatttcgt 51152227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 31932308 - 31932366
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttc-tttcgttcgttttgtgatttcgt 250  Q
    |||||||||||||||||||||||||| || ||||| ||| ||| |||||||| ||||||    
T  31932308 ttaaataagtgatttttcacatattttcaactttctttttgttagttttgtgttttcgt 31932366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 24789238 - 24789291
Alignment:
Q  194 taaataagtgatttttcacatatttccagctttctttcgttcgttttgtgattt 247  Q
    |||||||||| |||||||||||||| ||| ||| ||||||| ||||||| ||||    
T  24789238 taaataagtgttttttcacatattttcagttttttttcgttggttttgtaattt 24789291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 24819021 - 24818968
Alignment:
Q  194 taaataagtgatttttcacatatttccagctttctttcgttcgttttgtgattt 247  Q
    |||||||||| |||||||||||||| ||| ||| ||||||| ||||||| ||||    
T  24819021 taaataagtgttttttcacatattttcagttttttttcgttggttttgtaattt 24818968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 44150115 - 44150058
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||||||||||||||||  || |||||||| || |||||||||||||||    
T  44150115 ttaaataagtgatttttcacatatttttagttttctttctttggttttgtgatttcgt 44150058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 13548974 - 13548917
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    |||||||||| ||||||||||||||| || |||||||| ||| ||||||||| |||||    
T  13548974 ttaaataagtaatttttcacatattttcacctttcttttgttggttttgtgaattcgt 13548917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 15261486 - 15261430
Alignment:
Q  194 taaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    |||||||||||||||| ||||| || ||| |||||||||||  ||||||||||||||    
T  15261486 taaataagtgattttttacataatttcagttttctttcgttgattttgtgatttcgt 15261430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 27666269 - 27666311
Alignment:
Q  205 tttttcacatatttccagctttctttcgttcgttttgtgattt 247  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||    
T  27666269 tttttcatatattttcagctttctttcgttggttttgtgattt 27666311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 42168095 - 42168041
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgattt 247  Q
    ||||||| |||||| ||||| ||||| ||||||||||||||| ||||||||||||    
T  42168095 ttaaataggtgattattcacgtattttcagctttctttcgttggttttgtgattt 42168041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 33937461 - 33937409
Alignment:
Q  195 aaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttc 248  Q
    |||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||    
T  33937461 aaataagtgatttt-cacgtattttcagctttctttcgtttgttttgtgatttc 33937409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 37451789 - 37451842
Alignment:
Q  198 taagtgatttttcacatatttccagcttt-ctttcgttcgttttgtgatttcgt 250  Q
    |||||||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  37451789 taagtgatttttcacatatttttagcttttctttcgttggttttgtgatttcgt 37451842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 30678314 - 30678358
Alignment:
Q  206 ttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  30678314 ttttcacatattttcagttttctttcgtttgttttgtgatttcgt 30678358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 15175859 - 15175915
Alignment:
Q  193 ttaaataagtgatttttcacatatttccagctttctttcgttcgttttgtgatttcgt 250  Q
    ||||||||||||||||||| |||||| ||  ||||||||||| | |||||||||||||    
T  15175859 ttaaataagtgatttttcaaatattttcaaatttctttcgtttg-tttgtgatttcgt 15175915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University