View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18012_low_13 (Length: 201)

Name: NF18012_low_13
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18012_low_13
NF18012_low_13
[»] scaffold0087 (10 HSPs)
scaffold0087 (22-186)||(12475-12639)
scaffold0087 (14-186)||(55115-55287)
scaffold0087 (14-176)||(19519-19681)
scaffold0087 (14-176)||(29867-30029)
scaffold0087 (50-151)||(33899-34000)
scaffold0087 (54-151)||(39950-40047)
scaffold0087 (19-137)||(816-935)
scaffold0087 (19-137)||(15705-15824)
scaffold0087 (50-170)||(5488-5609)
scaffold0087 (50-170)||(22603-22724)
[»] chr6 (25 HSPs)
chr6 (16-186)||(5755431-5755601)
chr6 (16-186)||(5760909-5761079)
chr6 (40-152)||(5882934-5883046)
chr6 (29-152)||(5880206-5880329)
chr6 (53-152)||(5763943-5764042)
chr6 (53-152)||(5767478-5767577)
chr6 (53-152)||(5771013-5771112)
chr6 (53-152)||(5774548-5774647)
chr6 (53-152)||(5778083-5778182)
chr6 (53-152)||(5781618-5781717)
chr6 (53-152)||(5785153-5785252)
chr6 (53-152)||(5788688-5788787)
chr6 (53-152)||(5792223-5792322)
chr6 (53-152)||(5795758-5795857)
chr6 (53-152)||(5799293-5799392)
chr6 (53-152)||(5802828-5802927)
chr6 (53-152)||(5806363-5806462)
chr6 (53-152)||(5809898-5809997)
chr6 (53-152)||(5813433-5813532)
chr6 (53-152)||(5816968-5817067)
chr6 (53-152)||(5820503-5820602)
chr6 (50-151)||(5829827-5829928)
chr6 (53-162)||(5890170-5890279)
chr6 (41-135)||(5826966-5827060)
chr6 (50-149)||(5852773-5852872)


Alignment Details
Target: scaffold0087 (Bit Score: 141; Significance: 4e-74; HSPs: 10)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 12639 - 12475
Alignment:
Q  22 atcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12639 atcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacattcaagtatctcaaactcgaagataaattccag 12540  T
Q  122 aaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  12539 aaccatttaggaaatgaatctgaaataccacaattagaaatatttagatcagcaagccccctttg 12475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 55287 - 55115
Alignment:
Q  14 caaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagata 113  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  55287 caaatatcttcataatttacattcagactttgtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatctcaaactcgaaggta 55188  T
Q  114 aattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||    
T  55187 aattccagaaccatttaggaaatgaatctgaaataccacaattagagatatttatatcagtaagccacctttg 55115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 19681 - 19519
Alignment:
Q  14 caaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagata 113  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  19681 caaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaatatccaagtatgtcaaactcgaagata 19582  T
Q  114 aattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaa 176  Q
    ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19581 aattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaa 19519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 30029 - 29867
Alignment:
Q  14 caaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagata 113  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  30029 caaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaatatccaagtatgtcaaactcgaagata 29930  T
Q  114 aattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaa 176  Q
    ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29929 aattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaa 29867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 34000 - 33899
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 149  Q
    ||||||||||||| ||| || ||| ||||||| ||||||| |||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  34000 gattttggcaaggttcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaatac 33901  T
Q  150 ca 151  Q
    ||    
T  33900 ca 33899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 40047 - 39950
Alignment:
Q  54 ttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatacca 151  Q
    |||||||||||||||| ||||||||||  || || | ||||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||||    
T  40047 ttggcaagggtccattaagtttgttatacgatacgttcaagtatgtcaaacttgaagatagattccaaaaccattttggaaatgaatctaaaatacca 39950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 935 - 816
Alignment:
Q  19 ataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaatt 117  Q
    |||||||||| |||| ||   |||||| || ||||| |||||||| ||||||||||||||||| ||||||| |||||||  ||||| | |||||||||||    
T  935 ataatcataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaatt 836  T
Q  118 ccagaaccatttaggaaatg 137  Q
    ||| || |||||||| ||||    
T  835 ccaaaatcatttagggaatg 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 15824 - 15705
Alignment:
Q  19 ataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaatt 117  Q
    |||||||||| |||| ||   |||||| || ||||| |||||||| ||||||||||||||||| ||||||| |||||||  ||||| | |||||||||||    
T  15824 ataatcataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaatt 15725  T
Q  118 ccagaaccatttaggaaatg 137  Q
    ||| || |||||||| ||||    
T  15724 ccaaaatcatttagggaatg 15705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 5609 - 5488
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaattccagaaccatttaggaaatgaatctgaaata 148  Q
    ||||| |||||||| ||||||||||||||||| ||||||  |||||||  ||||| | |||||||||||||| || ||||| || ||||||||| ||||     
T  5609 gatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaaaatcatttggggaatgaatctaaaatg 5510  T
Q  149 ccacatttagagatatttagat 170  Q
    ||    ||||||||||||||||    
T  5509 ccgttattagagatatttagat 5488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 22724 - 22603
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaattccagaaccatttaggaaatgaatctgaaata 148  Q
    ||||| |||||||| ||||||||||||||||| ||||||  |||||||  ||||| | |||||||||||||| || ||||| || ||||||||| ||||     
T  22724 gatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaaaatcattttgggaatgaatctaaaatg 22625  T
Q  149 ccacatttagagatatttagat 170  Q
    ||    ||||||||||||||||    
T  22624 ccgttattagagatatttagat 22603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 5755601 - 5755431
Alignment:
Q  16 aatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  5755601 aatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaatccaagtatttcaaacttgaagataaa 5755502  T
Q  116 ttccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    ||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5755501 ttcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttg 5755431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 5761079 - 5760909
Alignment:
Q  16 aatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  5761079 aatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaatccaagtatttcaaacttgaagataaa 5760980  T
Q  116 ttccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 186  Q
    ||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5760979 ttcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttg 5760909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 5883046 - 5882934
Alignment:
Q  40 acttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaa 139  Q
    |||||| || |||||||||||||||||||| ||||||||||| ||||||| |||||||  |||||||||||| | |||||| ||||||||||||| ||||    
T  5883046 acttggaaatgattttggcaagggtccattaagtttgttatgtgaaacattcaagtattccaaactcgaagagagattccaaaaccatttaggaactgaa 5882947  T
Q  140 tctgaaataccac 152  Q
    |||||||||||||    
T  5882946 tctgaaataccac 5882934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 5880329 - 5880206
Alignment:
Q  29 tttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatt 128  Q
    ||||| |||| |||||| ||| ||||||||||| ||||||  ||||||||||| ||||||| |||||||  |||||| ||||||| |||||| |||||||    
T  5880329 tttactttcaaacttggaaagtattttggcaagtgtccatgaagtttgttatgtgaaacattcaagtattgcaaacttgaagatagattccaaaaccatt 5880230  T
Q  129 taggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||||||||||    
T  5880229 taggaaatgaatctgaaataccac 5880206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5764042 - 5763943
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5764042 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5763943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5767577 - 5767478
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5767577 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5767478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5771112 - 5771013
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5771112 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5771013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5774647 - 5774548
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5774647 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5774548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5778182 - 5778083
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5778182 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5778083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5781717 - 5781618
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5781717 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5781618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5785252 - 5785153
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5785252 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5785153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5788787 - 5788688
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5788787 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5788688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5792322 - 5792223
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5792322 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5792223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5795857 - 5795758
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5795857 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5795758  T

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Target: chr6; HSP #15
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5799392 - 5799293
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5799392 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5799293  T

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Target: chr6; HSP #16
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5802927 - 5802828
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5802927 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5802828  T

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Target: chr6; HSP #17
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5806462 - 5806363
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5806462 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5806363  T

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Target: chr6; HSP #18
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5809997 - 5809898
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5809997 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5809898  T

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Target: chr6; HSP #19
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5813532 - 5813433
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5813532 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5813433  T

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Target: chr6; HSP #20
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5817067 - 5816968
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5817067 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5816968  T

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Target: chr6; HSP #21
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5820602 - 5820503
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5820602 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5820503  T

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Target: chr6; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 5829928 - 5829827
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 149  Q
    ||||||||||||| ||| || ||| ||||||| ||||||| |||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  5829928 gattttggcaaggttcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaatac 5829829  T
Q  150 ca 151  Q
    ||    
T  5829828 ca 5829827  T

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Target: chr6; HSP #23
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 5890170 - 5890279
Alignment:
Q  53 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 152  Q
    |||||||| |||||||| |||| |||||| ||||||| |||||||   ||||||||||| | |||||| |||||||||||||||||||| ||||||||||    
T  5890170 tttggcaaaggtccattaagttggttatgtgaaacattcaagtattgtaaactcgaagagagattccaaaaccatttaggaaatgaatccgaaataccac 5890269  T
Q  153 atttagagat 162  Q
    | ||||||||    
T  5890270 aattagagat 5890279  T

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Target: chr6; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 5827060 - 5826966
Alignment:
Q  41 cttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaa 135  Q
    ||||| || |||||||||||||||||||| | ||||||||| ||||||| ||||||   |||||| ||||||| |||||| ||||||||||||||    
T  5827060 cttggaaaagattttggcaagggtccattaattttgttatgtgaaacattcaagtaatgcaaacttgaagatagattccaaaaccatttaggaaa 5826966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 5852872 - 5852773
Alignment:
Q  50 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 149  Q
    |||||||||||   ||| || ||| ||||||| ||||||| |||||||  ||||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  5852872 gattttggcaacattcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagcttccaaaaccatttaggaaatgaatctgaaatac 5852773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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