View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_low_2 (Length: 430)
Name: NF18012_low_2
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 55124948 - 55124555
Alignment:
| Q |
16 |
attatactgaagagttttttattctggaaacaactacaatattcatcatcacataaaacatatttttgagaaatcctttcgaacccatcacttcagaatt |
115 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
55124948 |
attatgctgaagagttttttattttggaaacaactacaatattcatcatcacataaagcatatttttgagaaatcctttcgaatccatcacttcaaaatt |
55124849 |
T |
|
| Q |
116 |
tctcataacaaatcgannnnnnnaatgtaagattcaagtgagaagaatcaaattaaacaagaagttgagttatgagaaaaggtgagtgataaaataataa |
215 |
Q |
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||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55124848 |
tctcataacaaattgatttttttaatatgagattcaagtgagaagaatcaaattaaacaagaagatgagttatgagaaaaggtgagtgataaaataataa |
55124749 |
T |
|
| Q |
216 |
attggggttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaattgactaagatgatgattgaagtttaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55124748 |
attggggttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaattgactaagatgatgattaaagtttaa |
55124649 |
T |
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| Q |
316 |
taattactaatggtggtgggtgagtggagaccgtgttttcattttaaggaaattttgatattgttgttgctgatgggttaatggtgatggaaga |
409 |
Q |
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| T |
55124648 |
taattactaatggtggtgggtgagtggagaccgtgttttcattttaaggaaattttgatattgttgttgctgatgggttaatggtgatggaaga |
55124555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 191 - 409
Target Start/End: Complemental strand, 12732606 - 12732388
Alignment:
| Q |
191 |
gaaaaggtgagtgataaaataataaattggggttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaatt |
290 |
Q |
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| T |
12732606 |
gaaaaggtgagtgataaaataataaattggggttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaatt |
12732507 |
T |
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| Q |
291 |
gactaagatgatgattgaagtttaataattactaatggtggtgggtgagtggagaccgtgttttcattttaaggaaattttgatattgttgttgctgatg |
390 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12732506 |
gactaagatgatgattaaagtttaataattactaatggtggtgggtgagtggagaccgtgttttcattttaaggaaattttgatattgttgttgctgatg |
12732407 |
T |
|
| Q |
391 |
ggttaatggtgatggaaga |
409 |
Q |
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| T |
12732406 |
ggttaatggtgatggaaga |
12732388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 12732610 - 12732651
Alignment:
| Q |
231 |
caagtgagtgagtgaagattaagaagatgatttattaaattg |
272 |
Q |
| |
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| T |
12732610 |
caagtgagtgagtgaagattaagaagatgatttattaaattg |
12732651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 31 - 373
Target Start/End: Original strand, 9430094 - 9430438
Alignment:
| Q |
31 |
tttttattctggaaacaactacaatattcatcatcacataaaacatatttttgagaaatcctttcgaacccatcacttcagaatttctcataacaaatcg |
130 |
Q |
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|||||||||| |||||||| |||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
9430094 |
tttttattctcgaaacaacaacaatactcatcgtcacataaaacatattcttgagaaatcctttcaaacccatcactccaaaatttctcataacaaatct |
9430193 |
T |
|
| Q |
131 |
annnnnnn---aatgtaagattcaagtgagaagaatcaaattaaacaagaagttgagttatgagaaaaggtgagtgataaaataataaattggggttttg |
227 |
Q |
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| T |
9430194 |
tttttttttttaatgtgggattcaagtgagaagaatcaaattaaattagaagatgggttatgaaaaaatgtgagtggtaaaataataaattggggttttg |
9430293 |
T |
|
| Q |
228 |
ttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaattgactaagatgatgattgaagtttaataattactaatg |
327 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | | |
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| T |
9430294 |
ttacaagtgagtgggtgaagattaagaagatgatttatgaaattggtatttcatctctcaattgactaagaagatgattgaagtttattaattactgagg |
9430393 |
T |
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| Q |
328 |
gtggtgggtgagtggagaccgtgttttcattttaaggaaattttga |
373 |
Q |
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| T |
9430394 |
atagtgggtgagtggagaccgtattttca-tttaaggaaattttga |
9430438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 6679918 - 6680165
Alignment:
| Q |
16 |
attatactgaagagttttttattctggaaacaactacaatattcatcatcacataaaacatatttttgagaaatcctttcgaacccatcacttcagaatt |
115 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| || |||| |
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| T |
6679918 |
attataattaagagttttttattctggaaacaacaacaatattcatcatcacataaagcatatttctgagaaatcctttcaaacccatcactacaaaatt |
6680017 |
T |
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| Q |
116 |
tctcataacaaatcgannnnnnn--aatgtaagattcaagtgagaagaatcaaattaaacaagaagttgagttatgagaaaaggtgagtgataaaataat |
213 |
Q |
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|||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
6680018 |
tctcataacaaatctatttttttttaatgtaagattcaagtgaaaagaatcaaattaaataagaagatgagttatgagaaaaggtgagtgataaaat-at |
6680116 |
T |
|
| Q |
214 |
aaattggggttttgttacaagtgagtgagtgaagattaagaagatgatt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6680117 |
aaattggggttttgttacaagtgagtgagtgaagattaagaagatgatt |
6680165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 294 - 408
Target Start/End: Original strand, 6680153 - 6680267
Alignment:
| Q |
294 |
taagatgatgattgaagtttaataattactaatggtggtgggtgagtggagaccgtgttttcattttaaggaaattttgatattgttgttgctgatgggt |
393 |
Q |
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||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
6680153 |
taagaagatgattgaattttaataattactgatggtggtgggtgagtggagaccgtgttttcagtttaaggaaattttgatactgttgttgctgatgggt |
6680252 |
T |
|
| Q |
394 |
taatggtgatggaag |
408 |
Q |
| |
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||||||||||||||| |
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| T |
6680253 |
taatggtgatggaag |
6680267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 13856961 - 13856884
Alignment:
| Q |
222 |
gttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaattgactaagatgat |
302 |
Q |
| |
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||||||||| || ||||||||||||||||||| | ||| || |||||||||||||||||| |||||| |||||||||| |
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| T |
13856961 |
gttttgttataaaagagtgagtgaagattaaga---ttattgatgaaattggtatttcatctcacaattggctaagatgat |
13856884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 13868490 - 13868413
Alignment:
| Q |
222 |
gttttgttacaagtgagtgagtgaagattaagaagatgatttattaaattggtatttcatctctcaattgactaagatgat |
302 |
Q |
| |
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||||||||| || ||||||||||||||||||| | ||| || |||||||||||||||||| |||||| |||||||||| |
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| T |
13868490 |
gttttgttataaaagagtgagtgaagattaaga---ttattgatgaaattggtatttcatctcacaattggctaagatgat |
13868413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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